5J46A

Crystal structure of a peptide deformylase from burkholderia multivorans
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
169
structure length
169
Chain Sequence
KTMALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEDKNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGETFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLERAM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Peptide deformylase
publication title Crystal structure of a Peptide Deformylase from Burkholderia multivorans
rcsb
source organism Burkholderia multivorans (strain atcc 17616 / 249)
total genus 50
structure length 169
sequence length 169
ec nomenclature ec 3.5.1.88: Peptide deformylase.
pdb deposition date 2016-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01327 Pep_deformylase Polypeptide deformylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylase 5j46A00
1VEZA 1BSZA 1XEOA 1SV2A 5JEYA 5JF2A 3G6NA 5CWXA 5CPDA 3K6LA 4DR8A 1S17A 4WXKA 1WS1A 3O3JA 1BS5A 2W3TA 3E3UA 5JF5A 5J46A 1LM6A 5CP0A 1WS0A 2OS3A 3PN5A 4DR9A 3SVJP 5E5DA 1DEFA 4E9AA 1RQCA 1LMEA 3PN3A 5KOBA 5CVPA 4EOXP 1LMHA 2OS1A 1LRUA 5JF6A 1G27A 2DEFA 3U04A 3SW8P 1BS7A 3U7NA 1ZY1A 5JEXA 2AI7A 5CWYA 1IX1A 2AIEP 1LQYA 2AI9A 1BS6A 3FWXA 1SZZA 3U7MA 4AL2A 5JEZA 1XEMA 1LRYA 1LM4A 1BS8A 5CY7A 4JE7A 3UWAA 1VEVA 5HGWA 1VEYA 1Q1YA 4NT8A 4WXLA 2W3UA 3U7LA 4E9BA 2KMNA 3PN2A 1N5NA 5JF4A 3M6QA 2EW6A 2EW7A 5JF7A 1ZY0A 2EW5A 1ICJA 5JF0A 2OKLA 3PN4A 5T8ZA 3M6PA 3M6RA 1XENA 3U7KA 5CVKA 1JYMA 1BSKA 1G2AA 1DFFA 3G5KA 3CPMA 5JF1A 3G5PA 5I2BA 4AL3A 3QU1A 4JE6A 3CMDA 5CVQA 3STRP 3OCAA 2AIAA 1RL4A 5CX0A 4JE8A 1ZXZA 5CXJA 4AZ4A 1BSJA 5JF8A 5CY8A 5JF3A 2AI8A 2OS0A 1Y6HA 1V3YA 1LQWA 3UWBA 3M6OA 3PN6A 1BS4A 3L87A
chains in the Genus database with same CATH superfamily
1VEZA 1BSZA 1XEOA 1SV2A 5JEYA 5JF2A 3G6NA 5CWXA 5CPDA 3K6LA 4DR8A 1S17A 4WXKA 1WS1A 3O3JA 1BS5A 2W3TA 3E3UA 5JF5A 5J46A 1LM6A 5CP0A 1WS0A 2OS3A 3PN5A 4DR9A 3SVJP 5E5DA 1DEFA 4E9AA 1RQCA 1LMEA 3PN3A 5KOBA 5CVPA 4EOXP 1LMHA 2OS1A 1LRUA 5JF6A 1G27A 2DEFA 3U04A 3SW8P 1BS7A 3U7NA 1ZY1A 5JEXA 2AI7A 5CWYA 1IX1A 2AIEP 1LQYA 2AI9A 1BS6A 3FWXA 1SZZA 3U7MA 4AL2A 5JEZA 1XEMA 1LRYA 1LM4A 1BS8A 5CY7A 4JE7A 3UWAA 1VEVA 5HGWA 1VEYA 1Q1YA 4NT8A 4WXLA 2W3UA 3U7LA 4E9BA 2KMNA 3PN2A 1N5NA 5JF4A 3M6QA 2EW6A 2EW7A 5JF7A 1ZY0A 2EW5A 1ICJA 5JF0A 2OKLA 3PN4A 5T8ZA 3M6PA 3M6RA 1XENA 3U7KA 5CVKA 1JYMA 1BSKA 1G2AA 1DFFA 3G5KA 3CPMA 5JF1A 3G5PA 5I2BA 4AL3A 3QU1A 4JE6A 3CMDA 5CVQA 3STRP 3OCAA 2AIAA 1RL4A 5CX0A 4JE8A 1ZXZA 5CXJA 4AZ4A 1BSJA 5JF8A 5CY8A 5JF3A 2AI8A 2OS0A 1Y6HA 1V3YA 1LQWA 3UWBA 3M6OA 3PN6A 1BS4A 3L87A
chains in the Genus database with same CATH topology
1VEZA 1BSZA 1XEOA 1SV2A 5JEYA 5JF2A 3G6NA 5CWXA 5CPDA 3K6LA 4DR8A 1S17A 4WXKA 1WS1A 3O3JA 1BS5A 2W3TA 3E3UA 5JF5A 5J46A 1LM6A 5CP0A 1WS0A 2OS3A 3PN5A 4DR9A 3SVJP 5E5DA 1DEFA 4E9AA 1RQCA 1LMEA 3PN3A 5KOBA 5CVPA 4EOXP 1LMHA 2OS1A 1LRUA 5JF6A 1G27A 2DEFA 3U04A 3SW8P 1BS7A 3U7NA 1ZY1A 5JEXA 2AI7A 5CWYA 1IX1A 2AIEP 1LQYA 2AI9A 1BS6A 3FWXA 1SZZA 3U7MA 4AL2A 5JEZA 1XEMA 1LRYA 1LM4A 1BS8A 5CY7A 4JE7A 3UWAA 1VEVA 5HGWA 1VEYA 1Q1YA 4NT8A 4WXLA 2W3UA 3U7LA 4E9BA 2KMNA 3PN2A 1N5NA 5JF4A 3M6QA 2EW6A 2EW7A 5JF7A 1ZY0A 2EW5A 1ICJA 5JF0A 2OKLA 3PN4A 5T8ZA 3M6PA 3M6RA 1XENA 3U7KA 5CVKA 1JYMA 1BSKA 1G2AA 1DFFA 3G5KA 3CPMA 5JF1A 3G5PA 5I2BA 4AL3A 3QU1A 4JE6A 3CMDA 5CVQA 3STRP 3OCAA 2AIAA 1RL4A 5CX0A 4JE8A 1ZXZA 5CXJA 4AZ4A 1BSJA 5JF8A 5CY8A 5JF3A 2AI8A 2OS0A 1Y6HA 1V3YA 1LQWA 3UWBA 3M6OA 3PN6A 1BS4A 3L87A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VEZ A;  1BSZ A;  1XEO A;  1SV2 A;  5JEY A;  5JF2 A;  3G6N A;  5CWX A;  5CPD A;  3K6L A;  4DR8 A;  1S17 A;  4WXK A;  1WS1 A;  3O3J A;  1BS5 A;  2W3T A;  3E3U A;  5JF5 A;  5J46 A;  1LM6 A;  5CP0 A;  1WS0 A;  2OS3 A;  3PN5 A;  4DR9 A;  3SVJ P;  5E5D A;  1DEF A;  4E9A A;  1RQC A;  1LME A;  3PN3 A;  5KOB A;  5CVP A;  4EOX P;  1LMH A;  2OS1 A;  1LRU A;  5JF6 A;  1G27 A;  2DEF A;  3U04 A;  3SW8 P;  1BS7 A;  3U7N A;  1ZY1 A;  5JEX A;  2AI7 A;  5CWY A;  1IX1 A;  2AIE P;  1LQY A;  2AI9 A;  1BS6 A;  3FWX A;  1SZZ A;  3U7M A;  4AL2 A;  5JEZ A;  1XEM A;  1LRY A;  1LM4 A;  1BS8 A;  5CY7 A;  4JE7 A;  3UWA A;  1VEV A;  5HGW A;  1VEY A;  1Q1Y A;  4NT8 A;  4WXL A;  2W3U A;  3U7L A;  4E9B A;  2KMN A;  3PN2 A;  1N5N A;  5JF4 A;  3M6Q A;  2EW6 A;  2EW7 A;  5JF7 A;  1ZY0 A;  2EW5 A;  1ICJ A;  5JF0 A;  2OKL A;  3PN4 A;  5T8Z A;  3M6P A;  3M6R A;  1XEN A;  3U7K A;  5CVK A;  1JYM A;  1BSK A;  1G2A A;  1DFF A;  3G5K A;  3CPM A;  5JF1 A;  3G5P A;  5I2B A;  4AL3 A;  3QU1 A;  4JE6 A;  3CMD A;  5CVQ A;  3STR P;  3OCA A;  2AIA A;  1RL4 A;  5CX0 A;  4JE8 A;  1ZXZ A;  5CXJ A;  4AZ4 A;  1BSJ A;  5JF8 A;  5CY8 A;  5JF3 A;  2AI8 A;  2OS0 A;  1Y6H A;  1V3Y A;  1LQW A;  3UWB A;  3M6O A;  3PN6 A;  1BS4 A;  3L87 A; 
#chains in the Genus database with same CATH topology
 1VEZ A;  1BSZ A;  1XEO A;  1SV2 A;  5JEY A;  5JF2 A;  3G6N A;  5CWX A;  5CPD A;  3K6L A;  4DR8 A;  1S17 A;  4WXK A;  1WS1 A;  3O3J A;  1BS5 A;  2W3T A;  3E3U A;  5JF5 A;  5J46 A;  1LM6 A;  5CP0 A;  1WS0 A;  2OS3 A;  3PN5 A;  4DR9 A;  3SVJ P;  5E5D A;  1DEF A;  4E9A A;  1RQC A;  1LME A;  3PN3 A;  5KOB A;  5CVP A;  4EOX P;  1LMH A;  2OS1 A;  1LRU A;  5JF6 A;  1G27 A;  2DEF A;  3U04 A;  3SW8 P;  1BS7 A;  3U7N A;  1ZY1 A;  5JEX A;  2AI7 A;  5CWY A;  1IX1 A;  2AIE P;  1LQY A;  2AI9 A;  1BS6 A;  3FWX A;  1SZZ A;  3U7M A;  4AL2 A;  5JEZ A;  1XEM A;  1LRY A;  1LM4 A;  1BS8 A;  5CY7 A;  4JE7 A;  3UWA A;  1VEV A;  5HGW A;  1VEY A;  1Q1Y A;  4NT8 A;  4WXL A;  2W3U A;  3U7L A;  4E9B A;  2KMN A;  3PN2 A;  1N5N A;  5JF4 A;  3M6Q A;  2EW6 A;  2EW7 A;  5JF7 A;  1ZY0 A;  2EW5 A;  1ICJ A;  5JF0 A;  2OKL A;  3PN4 A;  5T8Z A;  3M6P A;  3M6R A;  1XEN A;  3U7K A;  5CVK A;  1JYM A;  1BSK A;  1G2A A;  1DFF A;  3G5K A;  3CPM A;  5JF1 A;  3G5P A;  5I2B A;  4AL3 A;  3QU1 A;  4JE6 A;  3CMD A;  5CVQ A;  3STR P;  3OCA A;  2AIA A;  1RL4 A;  5CX0 A;  4JE8 A;  1ZXZ A;  5CXJ A;  4AZ4 A;  1BSJ A;  5JF8 A;  5CY8 A;  5JF3 A;  2AI8 A;  2OS0 A;  1Y6H A;  1V3Y A;  1LQW A;  3UWB A;  3M6O A;  3PN6 A;  1BS4 A;  3L87 A; 
#chains in the Genus database with same CATH homology
 1VEZ A;  1BSZ A;  1XEO A;  1SV2 A;  5JEY A;  5JF2 A;  3G6N A;  5CWX A;  5CPD A;  3K6L A;  4DR8 A;  1S17 A;  4WXK A;  1WS1 A;  3O3J A;  1BS5 A;  2W3T A;  3E3U A;  5JF5 A;  5J46 A;  1LM6 A;  5CP0 A;  1WS0 A;  2OS3 A;  3PN5 A;  4DR9 A;  3SVJ P;  5E5D A;  1DEF A;  4E9A A;  1RQC A;  1LME A;  3PN3 A;  5KOB A;  5CVP A;  4EOX P;  1LMH A;  2OS1 A;  1LRU A;  5JF6 A;  1G27 A;  2DEF A;  3U04 A;  3SW8 P;  1BS7 A;  3U7N A;  1ZY1 A;  5JEX A;  2AI7 A;  5CWY A;  1IX1 A;  2AIE P;  1LQY A;  2AI9 A;  1BS6 A;  3FWX A;  1SZZ A;  3U7M A;  4AL2 A;  5JEZ A;  1XEM A;  1LRY A;  1LM4 A;  1BS8 A;  5CY7 A;  4JE7 A;  3UWA A;  1VEV A;  5HGW A;  1VEY A;  1Q1Y A;  4NT8 A;  4WXL A;  2W3U A;  3U7L A;  4E9B A;  2KMN A;  3PN2 A;  1N5N A;  5JF4 A;  3M6Q A;  2EW6 A;  2EW7 A;  5JF7 A;  1ZY0 A;  2EW5 A;  1ICJ A;  5JF0 A;  2OKL A;  3PN4 A;  5T8Z A;  3M6P A;  3M6R A;  1XEN A;  3U7K A;  5CVK A;  1JYM A;  1BSK A;  1G2A A;  1DFF A;  3G5K A;  3CPM A;  5JF1 A;  3G5P A;  5I2B A;  4AL3 A;  3QU1 A;  4JE6 A;  3CMD A;  5CVQ A;  3STR P;  3OCA A;  2AIA A;  1RL4 A;  5CX0 A;  4JE8 A;  1ZXZ A;  5CXJ A;  4AZ4 A;  1BSJ A;  5JF8 A;  5CY8 A;  5JF3 A;  2AI8 A;  2OS0 A;  1Y6H A;  1V3Y A;  1LQW A;  3UWB A;  3M6O A;  3PN6 A;  1BS4 A;  3L87 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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