5J4TA

Structure of tetrameric jacalin complexed with glcnac beta-(1,3) gal-beta-ome
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
publication title Distortion of the ligand molecule as a strategy for modulating binding affinity: Further studies involving complexes of jacalin with beta-substituted disaccharides.
pubmed doi rcsb
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2016-04-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 5j4tA00
3VZGA 2GUCA 2HYQA 3MIVA 4WOGA 3MIUA 3R52A 5J4XA 2BMZA 1OUWA 3LL2A 2BN0A 1J4TA 3LL0A 4AKCA 1VBPA 1M26A 1TOQA 3LKYA 3LL1A 3R51A 3MITA 5BN6E 1UH1A 1UGYA 2JZ4A 4AK4A 4MQ0A 3VZEA 1UH0A 4R6PA 2GUXA 1WS5C 1KU8A 3WOCA 1C3MA 1J4SA 1PXDA 5JM1A 1J4UA 5J50A 2NU5A 3LLZA 3LLYA 1XXRA 4DDNA 3VY6A 3LM1A 5AV7A 4AKDA 4PIFA 1VBOA 5J51A 2GUEA 4R6QA 3AQGA 1JOTA 1C3NA 1UGWA 4R6OA 1XEZA 4R6RA 4PIUA 1TP8A 4PIKA 3P8SA 3R50A 3VZFA 2HYRA 1WS4A 1UGXA 3APAA 1XXQA 4PITA 2GUDA 1UGYC 1ZGSA 3VY7A 4AKBA 1JACA 3O44A 2NUOA 1UGWC 1WS5A 2GTYA 5EXGA 1C3KA 1X1VA 2BMYA 1KUJA 3WOBA 1WS4C 4GX7A 4R6NA 5J4TA 1ZGRA
chains in the Genus database with same CATH superfamily
3VZGA 2GUCA 2HYQA 3MIVA 4WOGA 3MIUA 1I5PA 3R52A 4W8JA 5J4XA 2BMZA 1OUWA 3LL2A 2BN0A 1J4TA 3LL0A 4AKCA 1VBPA 1M26A 1TOQA 3LKYA 3LL1A 3R51A 3MITA 5BN6E 1UH1A 1UGYA 2JZ4A 4AK4A 4ARXA 4MQ0A 3VZEA 1UH0A 4R6PA 3TOWA 4QX2A 2GUXA 1WS5C 1KU8A 1W99A 3WOCA 1C3MA 1J4SA 1PXDA 5JM1A 1JI6A 1J4UA 5J50A 2NU5A 3LLZA 3LLYA 1XXRA 4ARYA 4DDNA 3VY6A 3LM1A 5AV7A 4AKDA 1CIYA 4PIFA 1VBOA 5J51A 2GUEA 4D8MA 4R6QA 3AQGA 1JOTA 1C3NA 1UGWA 4R6OA 1XEZA 4R6RA 4QX0A 4PIUA 1TP8A 4PIKA 3P8SA 3R50A 3VZFA 4QX1A 2HYRA 1WS4A 1UGXA 3APAA 1XXQA 4PITA 3EB7A 2GUDA 1UGYC 2C9KA 1ZGSA 3VY7A 4AKBA 1JACA 3O44A 1DLCA 2NUOA 4QX3A 1UGWC 1WS5A 2GTYA 5EXGA 1C3KA 2QP2A 1X1VA 2BMYA 1KUJA 3WOBA 1WS4C 4GX7A 1VMOA 4R6NA 5J4TA 4MOAA 1ZGRA
chains in the Genus database with same CATH topology
3VZGA 2GUCA 2HYQA 3MIVA 4WOGA 3MIUA 3R52A 5J4XA 2BMZA 1OUWA 3LL2A 2BN0A 1J4TA 3LL0A 4AKCA 1VBPA 1M26A 1TOQA 3LKYA 3LL1A 3R51A 3MITA 5BN6E 1UH1A 1UGYA 2JZ4A 4AK4A 4MQ0A 3VZEA 1UH0A 4R6PA 2GUXA 1WS5C 1KU8A 3WOCA 1C3MA 1J4SA 1PXDA 5JM1A 1J4UA 5J50A 2NU5A 3LLZA 3LLYA 1XXRA 4DDNA 3VY6A 3LM1A 5AV7A 4AKDA 4PIFA 1VBOA 5J51A 2GUEA 4R6QA 3AQGA 1JOTA 1C3NA 1UGWA 4R6OA 1XEZA 4R6RA 4PIUA 1TP8A 4PIKA 3P8SA 3R50A 3VZFA 2HYRA 1WS4A 1UGXA 3APAA 1XXQA 4PITA 2GUDA 1UGYC 1ZGSA 3VY7A 4AKBA 1JACA 3O44A 2NUOA 1UGWC 1WS5A 2GTYA 5EXGA 1C3KA 1X1VA 2BMYA 1KUJA 3WOBA 1WS4C 4GX7A 4R6NA 5J4TA 1ZGRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VZG A;  2GUC A;  2HYQ A;  3MIV A;  4WOG A;  3MIU A;  3R52 A;  5J4X A;  2BMZ A;  1OUW A;  3LL2 A;  2BN0 A;  1J4T A;  3LL0 A;  4AKC A;  1VBP A;  1M26 A;  1TOQ A;  3LKY A;  3LL1 A;  3R51 A;  3MIT A;  5BN6 E;  1UH1 A;  1UGY A;  2JZ4 A;  4AK4 A;  4MQ0 A;  3VZE A;  1UH0 A;  4R6P A;  2GUX A;  1WS5 C;  1KU8 A;  3WOC A;  1C3M A;  1J4S A;  1PXD A;  5JM1 A;  1J4U A;  5J50 A;  2NU5 A;  3LLZ A;  3LLY A;  1XXR A;  4DDN A;  3VY6 A;  3LM1 A;  5AV7 A;  4AKD A;  4PIF A;  1VBO A;  5J51 A;  2GUE A;  4R6Q A;  3AQG A;  1JOT A;  1C3N A;  1UGW A;  4R6O A;  1XEZ A;  4R6R A;  4PIU A;  1TP8 A;  4PIK A;  3P8S A;  3R50 A;  3VZF A;  2HYR A;  1WS4 A;  1UGX A;  3APA A;  1XXQ A;  4PIT A;  2GUD A;  1UGY C;  1ZGS A;  3VY7 A;  4AKB A;  1JAC A;  3O44 A;  2NUO A;  1UGW C;  1WS5 A;  2GTY A;  5EXG A;  1C3K A;  1X1V A;  2BMY A;  1KUJ A;  3WOB A;  1WS4 C;  4GX7 A;  4R6N A;  5J4T A;  1ZGR A; 
#chains in the Genus database with same CATH topology
 3VZG A;  2GUC A;  2HYQ A;  3MIV A;  4WOG A;  3MIU A;  1I5P A;  3R52 A;  4W8J A;  5J4X A;  2BMZ A;  1OUW A;  3LL2 A;  2BN0 A;  1J4T A;  3LL0 A;  4AKC A;  1VBP A;  1M26 A;  1TOQ A;  3LKY A;  3LL1 A;  3R51 A;  3MIT A;  5BN6 E;  1UH1 A;  1UGY A;  2JZ4 A;  4AK4 A;  4ARX A;  4MQ0 A;  3VZE A;  1UH0 A;  4R6P A;  3TOW A;  4QX2 A;  2GUX A;  1WS5 C;  1KU8 A;  1W99 A;  3WOC A;  1C3M A;  1J4S A;  1PXD A;  5JM1 A;  1JI6 A;  1J4U A;  5J50 A;  2NU5 A;  3LLZ A;  3LLY A;  1XXR A;  4ARY A;  4DDN A;  3VY6 A;  3LM1 A;  5AV7 A;  4AKD A;  1CIY A;  4PIF A;  1VBO A;  5J51 A;  2GUE A;  4D8M A;  4R6Q A;  3AQG A;  1JOT A;  1C3N A;  1UGW A;  4R6O A;  1XEZ A;  4R6R A;  4QX0 A;  4PIU A;  1TP8 A;  4PIK A;  3P8S A;  3R50 A;  3VZF A;  4QX1 A;  2HYR A;  1WS4 A;  1UGX A;  3APA A;  1XXQ A;  4PIT A;  3EB7 A;  2GUD A;  1UGY C;  2C9K A;  1ZGS A;  3VY7 A;  4AKB A;  1JAC A;  3O44 A;  1DLC A;  2NUO A;  4QX3 A;  1UGW C;  1WS5 A;  2GTY A;  5EXG A;  1C3K A;  2QP2 A;  1X1V A;  2BMY A;  1KUJ A;  3WOB A;  1WS4 C;  4GX7 A;  1VMO A;  4R6N A;  5J4T A;  4MOA A;  1ZGR A; 
#chains in the Genus database with same CATH homology
 3VZG A;  2GUC A;  2HYQ A;  3MIV A;  4WOG A;  3MIU A;  3R52 A;  5J4X A;  2BMZ A;  1OUW A;  3LL2 A;  2BN0 A;  1J4T A;  3LL0 A;  4AKC A;  1VBP A;  1M26 A;  1TOQ A;  3LKY A;  3LL1 A;  3R51 A;  3MIT A;  5BN6 E;  1UH1 A;  1UGY A;  2JZ4 A;  4AK4 A;  4MQ0 A;  3VZE A;  1UH0 A;  4R6P A;  2GUX A;  1WS5 C;  1KU8 A;  3WOC A;  1C3M A;  1J4S A;  1PXD A;  5JM1 A;  1J4U A;  5J50 A;  2NU5 A;  3LLZ A;  3LLY A;  1XXR A;  4DDN A;  3VY6 A;  3LM1 A;  5AV7 A;  4AKD A;  4PIF A;  1VBO A;  5J51 A;  2GUE A;  4R6Q A;  3AQG A;  1JOT A;  1C3N A;  1UGW A;  4R6O A;  1XEZ A;  4R6R A;  4PIU A;  1TP8 A;  4PIK A;  3P8S A;  3R50 A;  3VZF A;  2HYR A;  1WS4 A;  1UGX A;  3APA A;  1XXQ A;  4PIT A;  2GUD A;  1UGY C;  1ZGS A;  3VY7 A;  4AKB A;  1JAC A;  3O44 A;  2NUO A;  1UGW C;  1WS5 A;  2GTY A;  5EXG A;  1C3K A;  1X1V A;  2BMY A;  1KUJ A;  3WOB A;  1WS4 C;  4GX7 A;  4R6N A;  5J4T A;  1ZGR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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