5J51A

Structure of tetrameric jacalin complexed with gal alpha-(1,4) gal
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
publication title Effect of linkage on the location of reducing and nonreducing sugars bound to jacalin.
pubmed doi rcsb
total genus 31
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2016-04-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 5j51A00
2NU5A 4PITA 5EXGA 1UGXA 4MQ0A 1C3KA 1WS5C 2JZ4A 3VY6A 1C3MA 3WOCA 1UH1A 1ZGRA 1M26A 4R6PA 3VY7A 3VZFA 2HYRA 2GUDA 1ZGSA 1VBOA 1PXDA 1WS5A 4GX7A 1UGWC 1XXRA 3VZGA 3WOBA 4DDNA 4R6NA 1WS4C 3LL2A 4WOGA 3LM1A 3O44A 3LKYA 1UGWA 5J51A 1WS4A 3P8SA 3MITA 1J4TA 5J50A 3AQGA 1OUWA 2GUXA 2BN0A 1UGYC 3MIVA 1TP8A 5J4XA 1KUJA 4AKCA 4AKDA 1C3NA 4PIUA 1UGYA 1UH0A 3R51A 5BN6E 1VBPA 2GUCA 4AKBA 3R50A 5AV7A 3APAA 1XXQA 2BMZA 3LLZA 1J4SA 3R52A 1XEZA 4PIKA 1JOTA 5J4TA 2GUEA 3LL1A 4AK4A 4R6RA 1J4UA 2NUOA 3LL0A 1KU8A 1TOQA 4PIFA 5JM1A 4R6OA 2HYQA 2BMYA 3VZEA 3MIUA 1X1VA 1JACA 3LLYA 2GTYA 4R6QA
chains in the Genus database with same CATH superfamily
2NU5A 3TOWA 4PITA 5EXGA 4QX3A 1UGXA 4ARYA 1W99A 4MQ0A 1C3KA 2C9KA 4QX1A 1WS5C 1I5PA 2JZ4A 3VY6A 1C3MA 3WOCA 1UH1A 1ZGRA 1M26A 4R6PA 3VY7A 3VZFA 2HYRA 2GUDA 1ZGSA 1VBOA 1PXDA 1WS5A 1CIYA 4GX7A 4QX0A 1UGWC 1XXRA 3VZGA 3WOBA 4DDNA 4R6NA 1WS4C 3LL2A 4WOGA 3LM1A 3O44A 3LKYA 1UGWA 5J51A 1WS4A 3P8SA 3MITA 1J4TA 4MOAA 5J50A 3AQGA 1OUWA 2GUXA 2BN0A 1UGYC 2QP2A 3MIVA 1TP8A 5J4XA 1KUJA 1VMOA 4AKCA 4AKDA 1C3NA 4PIUA 1UGYA 1UH0A 3EB7A 3R51A 5BN6E 1VBPA 2GUCA 4D8MA 4AKBA 1DLCA 3R50A 5AV7A 3APAA 1XXQA 2BMZA 4W8JA 3LLZA 1JI6A 1J4SA 3R52A 1XEZA 4PIKA 1JOTA 4QX2A 5J4TA 2GUEA 3LL1A 4AK4A 4R6RA 1J4UA 2NUOA 3LL0A 1KU8A 1TOQA 4PIFA 5JM1A 4R6OA 2HYQA 2BMYA 3VZEA 3MIUA 1X1VA 1JACA 3LLYA 4ARXA 2GTYA 4R6QA
chains in the Genus database with same CATH topology
2NU5A 4PITA 5EXGA 1UGXA 4MQ0A 1C3KA 1WS5C 2JZ4A 3VY6A 1C3MA 3WOCA 1UH1A 1ZGRA 1M26A 4R6PA 3VY7A 3VZFA 2HYRA 2GUDA 1ZGSA 1VBOA 1PXDA 1WS5A 4GX7A 1UGWC 1XXRA 3VZGA 3WOBA 4DDNA 4R6NA 1WS4C 3LL2A 4WOGA 3LM1A 3O44A 3LKYA 1UGWA 5J51A 1WS4A 3P8SA 3MITA 1J4TA 5J50A 3AQGA 1OUWA 2GUXA 2BN0A 1UGYC 3MIVA 1TP8A 5J4XA 1KUJA 4AKCA 4AKDA 1C3NA 4PIUA 1UGYA 1UH0A 3R51A 5BN6E 1VBPA 2GUCA 4AKBA 3R50A 5AV7A 3APAA 1XXQA 2BMZA 3LLZA 1J4SA 3R52A 1XEZA 4PIKA 1JOTA 5J4TA 2GUEA 3LL1A 4AK4A 4R6RA 1J4UA 2NUOA 3LL0A 1KU8A 1TOQA 4PIFA 5JM1A 4R6OA 2HYQA 2BMYA 3VZEA 3MIUA 1X1VA 1JACA 3LLYA 2GTYA 4R6QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NU5 A;  4PIT A;  5EXG A;  1UGX A;  4MQ0 A;  1C3K A;  1WS5 C;  2JZ4 A;  3VY6 A;  1C3M A;  3WOC A;  1UH1 A;  1ZGR A;  1M26 A;  4R6P A;  3VY7 A;  3VZF A;  2HYR A;  2GUD A;  1ZGS A;  1VBO A;  1PXD A;  1WS5 A;  4GX7 A;  1UGW C;  1XXR A;  3VZG A;  3WOB A;  4DDN A;  4R6N A;  1WS4 C;  3LL2 A;  4WOG A;  3LM1 A;  3O44 A;  3LKY A;  1UGW A;  5J51 A;  1WS4 A;  3P8S A;  3MIT A;  1J4T A;  5J50 A;  3AQG A;  1OUW A;  2GUX A;  2BN0 A;  1UGY C;  3MIV A;  1TP8 A;  5J4X A;  1KUJ A;  4AKC A;  4AKD A;  1C3N A;  4PIU A;  1UGY A;  1UH0 A;  3R51 A;  5BN6 E;  1VBP A;  2GUC A;  4AKB A;  3R50 A;  5AV7 A;  3APA A;  1XXQ A;  2BMZ A;  3LLZ A;  1J4S A;  3R52 A;  1XEZ A;  4PIK A;  1JOT A;  5J4T A;  2GUE A;  3LL1 A;  4AK4 A;  4R6R A;  1J4U A;  2NUO A;  3LL0 A;  1KU8 A;  1TOQ A;  4PIF A;  5JM1 A;  4R6O A;  2HYQ A;  2BMY A;  3VZE A;  3MIU A;  1X1V A;  1JAC A;  3LLY A;  2GTY A;  4R6Q A; 
#chains in the Genus database with same CATH topology
 2NU5 A;  3TOW A;  4PIT A;  5EXG A;  4QX3 A;  1UGX A;  4ARY A;  1W99 A;  4MQ0 A;  1C3K A;  2C9K A;  4QX1 A;  1WS5 C;  1I5P A;  2JZ4 A;  3VY6 A;  1C3M A;  3WOC A;  1UH1 A;  1ZGR A;  1M26 A;  4R6P A;  3VY7 A;  3VZF A;  2HYR A;  2GUD A;  1ZGS A;  1VBO A;  1PXD A;  1WS5 A;  1CIY A;  4GX7 A;  4QX0 A;  1UGW C;  1XXR A;  3VZG A;  3WOB A;  4DDN A;  4R6N A;  1WS4 C;  3LL2 A;  4WOG A;  3LM1 A;  3O44 A;  3LKY A;  1UGW A;  5J51 A;  1WS4 A;  3P8S A;  3MIT A;  1J4T A;  4MOA A;  5J50 A;  3AQG A;  1OUW A;  2GUX A;  2BN0 A;  1UGY C;  2QP2 A;  3MIV A;  1TP8 A;  5J4X A;  1KUJ A;  1VMO A;  4AKC A;  4AKD A;  1C3N A;  4PIU A;  1UGY A;  1UH0 A;  3EB7 A;  3R51 A;  5BN6 E;  1VBP A;  2GUC A;  4D8M A;  4AKB A;  1DLC A;  3R50 A;  5AV7 A;  3APA A;  1XXQ A;  2BMZ A;  4W8J A;  3LLZ A;  1JI6 A;  1J4S A;  3R52 A;  1XEZ A;  4PIK A;  1JOT A;  4QX2 A;  5J4T A;  2GUE A;  3LL1 A;  4AK4 A;  4R6R A;  1J4U A;  2NUO A;  3LL0 A;  1KU8 A;  1TOQ A;  4PIF A;  5JM1 A;  4R6O A;  2HYQ A;  2BMY A;  3VZE A;  3MIU A;  1X1V A;  1JAC A;  3LLY A;  4ARX A;  2GTY A;  4R6Q A; 
#chains in the Genus database with same CATH homology
 2NU5 A;  4PIT A;  5EXG A;  1UGX A;  4MQ0 A;  1C3K A;  1WS5 C;  2JZ4 A;  3VY6 A;  1C3M A;  3WOC A;  1UH1 A;  1ZGR A;  1M26 A;  4R6P A;  3VY7 A;  3VZF A;  2HYR A;  2GUD A;  1ZGS A;  1VBO A;  1PXD A;  1WS5 A;  4GX7 A;  1UGW C;  1XXR A;  3VZG A;  3WOB A;  4DDN A;  4R6N A;  1WS4 C;  3LL2 A;  4WOG A;  3LM1 A;  3O44 A;  3LKY A;  1UGW A;  5J51 A;  1WS4 A;  3P8S A;  3MIT A;  1J4T A;  5J50 A;  3AQG A;  1OUW A;  2GUX A;  2BN0 A;  1UGY C;  3MIV A;  1TP8 A;  5J4X A;  1KUJ A;  4AKC A;  4AKD A;  1C3N A;  4PIU A;  1UGY A;  1UH0 A;  3R51 A;  5BN6 E;  1VBP A;  2GUC A;  4AKB A;  3R50 A;  5AV7 A;  3APA A;  1XXQ A;  2BMZ A;  3LLZ A;  1J4S A;  3R52 A;  1XEZ A;  4PIK A;  1JOT A;  5J4T A;  2GUE A;  3LL1 A;  4AK4 A;  4R6R A;  1J4U A;  2NUO A;  3LL0 A;  1KU8 A;  1TOQ A;  4PIF A;  5JM1 A;  4R6O A;  2HYQ A;  2BMY A;  3VZE A;  3MIU A;  1X1V A;  1JAC A;  3LLY A;  2GTY A;  4R6Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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