5J5HA

X-ray structure of acetylcholine binding protein (achbp) in complex with 6-(2-methoxyphenyl)-n4,n4-bis[(pyridin-2-yl)methyl]pyrimidine-2,4-diamine
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
209
structure length
204
Chain Sequence
DDDKLDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Acetylcholine-binding protein
molecule keywords Acetylcholine-binding protein
publication title Substituted 2-Aminopyrimidines Selective for alpha 7-Nicotinic Acetylcholine Receptor Activation and Association with Acetylcholine Binding Proteins.
pubmed doi rcsb
source organism Lymnaea stagnalis
total genus 51
structure length 204
sequence length 209
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2016-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5j5hA00
3UU8A 4ZK4A 4IL9A 4F8HA 3UQ7A 4UM3P 2XQ4A 2Y7YA 2W8GA 4Z90A 4A97A 5HCMA 2ZJUA 3WIPA 5CFBA 5HEUA 2YKSA 3ZDGA 2YMEA 4ILAA 3RQUA 4TNWA 4ZR6A 4ALXA 2XQAA 3PEOA 5AFKA 2WN9A 5J5GA 5L4EA 3WTHA 5LG3A 4AFHA 3UU6A 4A98A 2XQ5A 3LSVA 4HFHA 5AFHA 3P50A 2WNJA 4DBMA 5J5FA 4HFDA 3ZDHA 4HQPA 3UQ4A 1I9BA 2YMDA 4HFIA 4IL4A 4QACA 5J0ZA 3TLTA 2BR7A 5SYOA 4LMKA 3UU3A 4WV9A 4UM3S 3SH1A 3JADA 3RHWA 5CO5A 3U8MA 2WNCA 4EZ1A 5AFMA 3U8KA 1UV6A 5J5HA 4UM1A 5AFLA 4QAAA 4ZK1A 2XQ9A 3WTKA 5HEJA 2BYNA 2XNUA 2Y54A 4ZJSA 1UX2A 2Y56A 5AFJA 3TLWA 4B5DA 5KE4A 3RQWA 4QABA 4QH4A 2C9TA 3TLSA 4XK9A 4ILBA 5AFNA 4NPPA 3GUAA 4TWHA 3ZKRA 5J5IA 2BG9C 2W8FA 5LXBA 4X5TA 3RI5A 2XNVA 4COFA 2PGZA 4ZRUA 3IGQA 3EHZA 3C79A 5HEOA 2XQ3A 3WTIA 4TNVA 4Z91A 4ZZBA 2UZ6A 3U8JA 3WTLA 2BJ0A 4LMLA 2BG9A 4ZZCA 5AFMB 5HCJA 3TLVA 4UXUA 2BYQA 2X00D 2YOEA 5HEHA 4BFQA 1UW6A 4QH1A 5BW2A 3EAMA 3T4MA 2XQ8A 3JAEA 3RIFA 2XQ7A 4UY2A 4ILCA 3WTNA 2BR8A 2XNTA 4IREA 2XZ5A 5BRXA 3WTMA 4ZJTA 3UUBA 4TWDA 5JMEA 3WTOA 4D01A 5HEGA 4HFEA 2VL0A 4PIRA 3UU4A 2XQ6A 4AFGA 4AFTA 3P4WA 3TLUA 4LMJA 4TWFA 4HFCA 2BYRA 5TVCA 2Y57A 3UU5A 2BG9B 2XYSA 5BP0A 2QC1B 2BYPA 2ZJVA 2WNLA 3RIAA 2BYSA 5L4HA 2Y58A 3EI0A 3JAFA 2X00A 2YN6A 5KZUA 3C84A 3WTJA 2XYTA 4XHEA 4HFBA 3SQ9A 3SQ6A 3U8NA 5AINA 2WZYA 4BQTA 3SIOA 5IUXA 3PMZA 4UM3A 5FJVA 3U8LA 2XZ6A 4FRRA 2BG9E 4QH5A 4NZBA 2PH9A 5L47A
chains in the Genus database with same CATH superfamily
3UU8A 4ZK4A 4IL9A 4F8HA 3UQ7A 4UM3P 2XQ4A 2Y7YA 2W8GA 4Z90A 4A97A 5HCMA 2ZJUA 3WIPA 5CFBA 5HEUA 2YKSA 3ZDGA 2YMEA 4ILAA 3RQUA 4TNWA 4ZR6A 4ALXA 2XQAA 3PEOA 5AFKA 2WN9A 5J5GA 5L4EA 3WTHA 5LG3A 4AFHA 3UU6A 4A98A 2XQ5A 3LSVA 4HFHA 5AFHA 3P50A 2WNJA 4DBMA 5J5FA 4HFDA 3ZDHA 4HQPA 3UQ4A 1I9BA 2YMDA 4HFIA 4IL4A 4QACA 5J0ZA 3TLTA 2BR7A 5SYOA 4LMKA 3UU3A 4WV9A 4UM3S 3SH1A 3JADA 3RHWA 5CO5A 3U8MA 2WNCA 4EZ1A 5AFMA 3U8KA 1UV6A 5J5HA 4UM1A 5AFLA 4QAAA 4ZK1A 2XQ9A 3WTKA 5HEJA 2BYNA 2XNUA 2Y54A 4ZJSA 1UX2A 2Y56A 5AFJA 3TLWA 4B5DA 5KE4A 3RQWA 4QABA 4QH4A 2C9TA 3TLSA 4XK9A 4ILBA 5AFNA 4NPPA 3GUAA 4TWHA 3ZKRA 5J5IA 2BG9C 2W8FA 5LXBA 4X5TA 3RI5A 2XNVA 4COFA 2PGZA 4ZRUA 3IGQA 3EHZA 3C79A 5HEOA 2XQ3A 3WTIA 4TNVA 4Z91A 4ZZBA 2UZ6A 3U8JA 3WTLA 2BJ0A 4LMLA 2BG9A 4ZZCA 5AFMB 5HCJA 3TLVA 4UXUA 2BYQA 2X00D 2YOEA 5HEHA 4BFQA 1UW6A 4QH1A 5BW2A 3EAMA 3T4MA 2XQ8A 3JAEA 3RIFA 2XQ7A 4UY2A 4ILCA 3WTNA 2BR8A 2XNTA 4IREA 2XZ5A 5BRXA 3WTMA 4ZJTA 3UUBA 4TWDA 5JMEA 3WTOA 4D01A 5HEGA 4HFEA 2VL0A 4PIRA 3UU4A 2XQ6A 4AFGA 4AFTA 3P4WA 3TLUA 4LMJA 4TWFA 4HFCA 2BYRA 5TVCA 2Y57A 3UU5A 2BG9B 2XYSA 5BP0A 2QC1B 2BYPA 2ZJVA 2WNLA 3RIAA 2BYSA 5L4HA 2Y58A 3EI0A 3JAFA 2X00A 2YN6A 5KZUA 3C84A 3WTJA 2XYTA 4XHEA 4HFBA 3SQ9A 3SQ6A 3U8NA 5AINA 2WZYA 4BQTA 3SIOA 5IUXA 3PMZA 4UM3A 5FJVA 3U8LA 2XZ6A 4FRRA 2BG9E 4QH5A 4NZBA 2PH9A 5L47A
chains in the Genus database with same CATH topology
3UU8A 4ZK4A 4IL9A 4F8HA 3UQ7A 4UM3P 2XQ4A 2Y7YA 2W8GA 4Z90A 4A97A 5HCMA 2ZJUA 3WIPA 5CFBA 5HEUA 2YKSA 3ZDGA 2YMEA 4ILAA 3RQUA 4TNWA 4ZR6A 4ALXA 2XQAA 3PEOA 5AFKA 2WN9A 5J5GA 5L4EA 3WTHA 5LG3A 4AFHA 3UU6A 4A98A 2XQ5A 3LSVA 4HFHA 5AFHA 3P50A 2WNJA 4DBMA 5J5FA 4HFDA 3ZDHA 4HQPA 3UQ4A 1I9BA 2YMDA 4HFIA 4IL4A 4QACA 5J0ZA 3TLTA 2BR7A 5SYOA 4LMKA 3UU3A 4WV9A 4UM3S 3SH1A 3JADA 3RHWA 5CO5A 3U8MA 2WNCA 4EZ1A 5AFMA 3U8KA 1UV6A 5J5HA 4UM1A 5AFLA 4QAAA 4ZK1A 2XQ9A 3WTKA 5HEJA 2BYNA 2XNUA 2Y54A 4ZJSA 1UX2A 2Y56A 5AFJA 3TLWA 4B5DA 5KE4A 3RQWA 4QABA 4QH4A 2C9TA 3TLSA 4XK9A 4ILBA 5AFNA 4NPPA 3GUAA 4TWHA 3ZKRA 5J5IA 2BG9C 2W8FA 5LXBA 4X5TA 3RI5A 2XNVA 4COFA 2PGZA 4ZRUA 3IGQA 3EHZA 3C79A 5HEOA 2XQ3A 3WTIA 4TNVA 4Z91A 4ZZBA 2UZ6A 3U8JA 3WTLA 2BJ0A 4LMLA 2BG9A 4ZZCA 5AFMB 5HCJA 3TLVA 4UXUA 2BYQA 2X00D 2YOEA 5HEHA 4BFQA 1UW6A 4QH1A 5BW2A 3EAMA 3T4MA 2XQ8A 3JAEA 3RIFA 2XQ7A 4UY2A 4ILCA 3WTNA 2BR8A 2XNTA 4IREA 2XZ5A 5BRXA 3WTMA 4ZJTA 3UUBA 4TWDA 5JMEA 3WTOA 4D01A 5HEGA 4HFEA 2VL0A 4PIRA 3UU4A 2XQ6A 4AFGA 4AFTA 3P4WA 3TLUA 4LMJA 4TWFA 4HFCA 2BYRA 5TVCA 2Y57A 3UU5A 2BG9B 2XYSA 5BP0A 2QC1B 2BYPA 2ZJVA 2WNLA 3RIAA 2BYSA 5L4HA 2Y58A 3EI0A 3JAFA 2X00A 2YN6A 5KZUA 3C84A 3WTJA 2XYTA 4XHEA 4HFBA 3SQ9A 3SQ6A 3U8NA 5AINA 2WZYA 4BQTA 3SIOA 5IUXA 3PMZA 4UM3A 5FJVA 3U8LA 2XZ6A 4FRRA 2BG9E 4QH5A 4NZBA 2PH9A 5L47A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UU8 A;  4ZK4 A;  4IL9 A;  4F8H A;  3UQ7 A;  4UM3 P;  2XQ4 A;  2Y7Y A;  2W8G A;  4Z90 A;  4A97 A;  5HCM A;  2ZJU A;  3WIP A;  5CFB A;  5HEU A;  2YKS A;  3ZDG A;  2YME A;  4ILA A;  3RQU A;  4TNW A;  4ZR6 A;  4ALX A;  2XQA A;  3PEO A;  5AFK A;  2WN9 A;  5J5G A;  5L4E A;  3WTH A;  5LG3 A;  4AFH A;  3UU6 A;  4A98 A;  2XQ5 A;  3LSV A;  4HFH A;  5AFH A;  3P50 A;  2WNJ A;  4DBM A;  5J5F A;  4HFD A;  3ZDH A;  4HQP A;  3UQ4 A;  1I9B A;  2YMD A;  4HFI A;  4IL4 A;  4QAC A;  5J0Z A;  3TLT A;  2BR7 A;  5SYO A;  4LMK A;  3UU3 A;  4WV9 A;  4UM3 S;  3SH1 A;  3JAD A;  3RHW A;  5CO5 A;  3U8M A;  2WNC A;  4EZ1 A;  5AFM A;  3U8K A;  1UV6 A;  5J5H A;  4UM1 A;  5AFL A;  4QAA A;  4ZK1 A;  2XQ9 A;  3WTK A;  5HEJ A;  2BYN A;  2XNU A;  2Y54 A;  4ZJS A;  1UX2 A;  2Y56 A;  5AFJ A;  3TLW A;  4B5D A;  5KE4 A;  3RQW A;  4QAB A;  4QH4 A;  2C9T A;  3TLS A;  4XK9 A;  4ILB A;  5AFN A;  4NPP A;  3GUA A;  4TWH A;  3ZKR A;  5J5I A;  2BG9 C;  2W8F A;  5LXB A;  4X5T A;  3RI5 A;  2XNV A;  4COF A;  2PGZ A;  4ZRU A;  3IGQ A;  3EHZ A;  3C79 A;  5HEO A;  2XQ3 A;  3WTI A;  4TNV A;  4Z91 A;  4ZZB A;  2UZ6 A;  3U8J A;  3WTL A;  2BJ0 A;  4LML A;  2BG9 A;  4ZZC A;  5AFM B;  5HCJ A;  3TLV A;  4UXU A;  2BYQ A;  2X00 D;  2YOE A;  5HEH A;  4BFQ A;  1UW6 A;  4QH1 A;  5BW2 A;  3EAM A;  3T4M A;  2XQ8 A;  3JAE A;  3RIF A;  2XQ7 A;  4UY2 A;  4ILC A;  3WTN A;  2BR8 A;  2XNT A;  4IRE A;  2XZ5 A;  5BRX A;  3WTM A;  4ZJT A;  3UUB A;  4TWD A;  5JME A;  3WTO A;  4D01 A;  5HEG A;  4HFE A;  2VL0 A;  4PIR A;  3UU4 A;  2XQ6 A;  4AFG A;  4AFT A;  3P4W A;  3TLU A;  4LMJ A;  4TWF A;  4HFC A;  2BYR A;  5TVC A;  2Y57 A;  3UU5 A;  2BG9 B;  2XYS A;  5BP0 A;  2QC1 B;  2BYP A;  2ZJV A;  2WNL A;  3RIA A;  2BYS A;  5L4H A;  2Y58 A;  3EI0 A;  3JAF A;  2X00 A;  2YN6 A;  5KZU A;  3C84 A;  3WTJ A;  2XYT A;  4XHE A;  4HFB A;  3SQ9 A;  3SQ6 A;  3U8N A;  5AIN A;  2WZY A;  4BQT A;  3SIO A;  5IUX A;  3PMZ A;  4UM3 A;  5FJV A;  3U8L A;  2XZ6 A;  4FRR A;  2BG9 E;  4QH5 A;  4NZB A;  2PH9 A;  5L47 A; 
#chains in the Genus database with same CATH topology
 3UU8 A;  4ZK4 A;  4IL9 A;  4F8H A;  3UQ7 A;  4UM3 P;  2XQ4 A;  2Y7Y A;  2W8G A;  4Z90 A;  4A97 A;  5HCM A;  2ZJU A;  3WIP A;  5CFB A;  5HEU A;  2YKS A;  3ZDG A;  2YME A;  4ILA A;  3RQU A;  4TNW A;  4ZR6 A;  4ALX A;  2XQA A;  3PEO A;  5AFK A;  2WN9 A;  5J5G A;  5L4E A;  3WTH A;  5LG3 A;  4AFH A;  3UU6 A;  4A98 A;  2XQ5 A;  3LSV A;  4HFH A;  5AFH A;  3P50 A;  2WNJ A;  4DBM A;  5J5F A;  4HFD A;  3ZDH A;  4HQP A;  3UQ4 A;  1I9B A;  2YMD A;  4HFI A;  4IL4 A;  4QAC A;  5J0Z A;  3TLT A;  2BR7 A;  5SYO A;  4LMK A;  3UU3 A;  4WV9 A;  4UM3 S;  3SH1 A;  3JAD A;  3RHW A;  5CO5 A;  3U8M A;  2WNC A;  4EZ1 A;  5AFM A;  3U8K A;  1UV6 A;  5J5H A;  4UM1 A;  5AFL A;  4QAA A;  4ZK1 A;  2XQ9 A;  3WTK A;  5HEJ A;  2BYN A;  2XNU A;  2Y54 A;  4ZJS A;  1UX2 A;  2Y56 A;  5AFJ A;  3TLW A;  4B5D A;  5KE4 A;  3RQW A;  4QAB A;  4QH4 A;  2C9T A;  3TLS A;  4XK9 A;  4ILB A;  5AFN A;  4NPP A;  3GUA A;  4TWH A;  3ZKR A;  5J5I A;  2BG9 C;  2W8F A;  5LXB A;  4X5T A;  3RI5 A;  2XNV A;  4COF A;  2PGZ A;  4ZRU A;  3IGQ A;  3EHZ A;  3C79 A;  5HEO A;  2XQ3 A;  3WTI A;  4TNV A;  4Z91 A;  4ZZB A;  2UZ6 A;  3U8J A;  3WTL A;  2BJ0 A;  4LML A;  2BG9 A;  4ZZC A;  5AFM B;  5HCJ A;  3TLV A;  4UXU A;  2BYQ A;  2X00 D;  2YOE A;  5HEH A;  4BFQ A;  1UW6 A;  4QH1 A;  5BW2 A;  3EAM A;  3T4M A;  2XQ8 A;  3JAE A;  3RIF A;  2XQ7 A;  4UY2 A;  4ILC A;  3WTN A;  2BR8 A;  2XNT A;  4IRE A;  2XZ5 A;  5BRX A;  3WTM A;  4ZJT A;  3UUB A;  4TWD A;  5JME A;  3WTO A;  4D01 A;  5HEG A;  4HFE A;  2VL0 A;  4PIR A;  3UU4 A;  2XQ6 A;  4AFG A;  4AFT A;  3P4W A;  3TLU A;  4LMJ A;  4TWF A;  4HFC A;  2BYR A;  5TVC A;  2Y57 A;  3UU5 A;  2BG9 B;  2XYS A;  5BP0 A;  2QC1 B;  2BYP A;  2ZJV A;  2WNL A;  3RIA A;  2BYS A;  5L4H A;  2Y58 A;  3EI0 A;  3JAF A;  2X00 A;  2YN6 A;  5KZU A;  3C84 A;  3WTJ A;  2XYT A;  4XHE A;  4HFB A;  3SQ9 A;  3SQ6 A;  3U8N A;  5AIN A;  2WZY A;  4BQT A;  3SIO A;  5IUX A;  3PMZ A;  4UM3 A;  5FJV A;  3U8L A;  2XZ6 A;  4FRR A;  2BG9 E;  4QH5 A;  4NZB A;  2PH9 A;  5L47 A; 
#chains in the Genus database with same CATH homology
 3UU8 A;  4ZK4 A;  4IL9 A;  4F8H A;  3UQ7 A;  4UM3 P;  2XQ4 A;  2Y7Y A;  2W8G A;  4Z90 A;  4A97 A;  5HCM A;  2ZJU A;  3WIP A;  5CFB A;  5HEU A;  2YKS A;  3ZDG A;  2YME A;  4ILA A;  3RQU A;  4TNW A;  4ZR6 A;  4ALX A;  2XQA A;  3PEO A;  5AFK A;  2WN9 A;  5J5G A;  5L4E A;  3WTH A;  5LG3 A;  4AFH A;  3UU6 A;  4A98 A;  2XQ5 A;  3LSV A;  4HFH A;  5AFH A;  3P50 A;  2WNJ A;  4DBM A;  5J5F A;  4HFD A;  3ZDH A;  4HQP A;  3UQ4 A;  1I9B A;  2YMD A;  4HFI A;  4IL4 A;  4QAC A;  5J0Z A;  3TLT A;  2BR7 A;  5SYO A;  4LMK A;  3UU3 A;  4WV9 A;  4UM3 S;  3SH1 A;  3JAD A;  3RHW A;  5CO5 A;  3U8M A;  2WNC A;  4EZ1 A;  5AFM A;  3U8K A;  1UV6 A;  5J5H A;  4UM1 A;  5AFL A;  4QAA A;  4ZK1 A;  2XQ9 A;  3WTK A;  5HEJ A;  2BYN A;  2XNU A;  2Y54 A;  4ZJS A;  1UX2 A;  2Y56 A;  5AFJ A;  3TLW A;  4B5D A;  5KE4 A;  3RQW A;  4QAB A;  4QH4 A;  2C9T A;  3TLS A;  4XK9 A;  4ILB A;  5AFN A;  4NPP A;  3GUA A;  4TWH A;  3ZKR A;  5J5I A;  2BG9 C;  2W8F A;  5LXB A;  4X5T A;  3RI5 A;  2XNV A;  4COF A;  2PGZ A;  4ZRU A;  3IGQ A;  3EHZ A;  3C79 A;  5HEO A;  2XQ3 A;  3WTI A;  4TNV A;  4Z91 A;  4ZZB A;  2UZ6 A;  3U8J A;  3WTL A;  2BJ0 A;  4LML A;  2BG9 A;  4ZZC A;  5AFM B;  5HCJ A;  3TLV A;  4UXU A;  2BYQ A;  2X00 D;  2YOE A;  5HEH A;  4BFQ A;  1UW6 A;  4QH1 A;  5BW2 A;  3EAM A;  3T4M A;  2XQ8 A;  3JAE A;  3RIF A;  2XQ7 A;  4UY2 A;  4ILC A;  3WTN A;  2BR8 A;  2XNT A;  4IRE A;  2XZ5 A;  5BRX A;  3WTM A;  4ZJT A;  3UUB A;  4TWD A;  5JME A;  3WTO A;  4D01 A;  5HEG A;  4HFE A;  2VL0 A;  4PIR A;  3UU4 A;  2XQ6 A;  4AFG A;  4AFT A;  3P4W A;  3TLU A;  4LMJ A;  4TWF A;  4HFC A;  2BYR A;  5TVC A;  2Y57 A;  3UU5 A;  2BG9 B;  2XYS A;  5BP0 A;  2QC1 B;  2BYP A;  2ZJV A;  2WNL A;  3RIA A;  2BYS A;  5L4H A;  2Y58 A;  3EI0 A;  3JAF A;  2X00 A;  2YN6 A;  5KZU A;  3C84 A;  3WTJ A;  2XYT A;  4XHE A;  4HFB A;  3SQ9 A;  3SQ6 A;  3U8N A;  5AIN A;  2WZY A;  4BQT A;  3SIO A;  5IUX A;  3PMZ A;  4UM3 A;  5FJV A;  3U8L A;  2XZ6 A;  4FRR A;  2BG9 E;  4QH5 A;  4NZB A;  2PH9 A;  5L47 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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