5J5IA

X-ray crystal structure of acetylcholine binding protein (achbp) in complex with 4-(2-amino-6-{bis[(pyridin-2-yl)methyl]amino}pyrimidin-4-yl)phenol
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
213
structure length
213
Chain Sequence
DYKDDDDKLDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Acetylcholine-binding protein, achbp
molecule keywords Acetylcholine-binding protein
publication title Substituted 2-Aminopyrimidines Selective for alpha 7-Nicotinic Acetylcholine Receptor Activation and Association with Acetylcholine Binding Proteins.
pubmed doi rcsb
source organism Lymnaea stagnalis
total genus 51
structure length 213
sequence length 213
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2016-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5j5iA00
4HFDA 2QC1B 2UZ6A 3EI0A 3ZKRA 4EZ1A 5BP0A 5AFLA 4ILAA 3TLUA 3RQWA 4FRRA 4IL9A 5HCMA 2WNLA 4XHEA 3WTJA 4AFTA 5J0ZA 5BRXA 3UU4A 4TNVA 3IGQA 3WTOA 3C84A 4UXUA 5AFHA 5HEGA 3UU6A 1UX2A 2BYPA 3LSVA 5HCJA 3ZDGA 2YN6A 5JMEA 4PIRA 2VL0A 5CO5A 4ALXA 5AFMA 3WTIA 4QAAA 4A97A 5KZUA 2YMEA 3RIFA 2XZ5A 2BR7A 5L4HA 4ZRUA 2BR8A 3RIAA 4UM3P 3UU5A 3TLSA 3UUBA 5IUXA 4UM1A 4AFGA 2BYSA 4ZZBA 2WZYA 4ZJSA 3WTMA 3JADA 4LMLA 3EHZA 3P50A 4TWHA 2WNJA 3PMZA 4XK9A 2Y54A 5TVCA 4HFIA 4HFBA 4QH1A 2Y7YA 3U8LA 3EAMA 2BG9C 4HFHA 2XYTA 3WTNA 5AFMB 3UQ4A 2WNCA 2ZJVA 2BG9A 4QACA 4AFHA 2YKSA 5J5GA 4IL4A 4UM3S 5J5IA 5J5HA 2XQAA 3RQUA 4ZJTA 3JAEA 3GUAA 2XNTA 4HFCA 3P4WA 3WTHA 3ZDHA 4HQPA 4QH5A 5J5FA 2BYNA 1UV6A 2XQ3A 2XNVA 4B5DA 3TLWA 3RI5A 3SQ9A 4DBMA 5CFBA 5HEJA 2PH9A 2W8FA 2XQ5A 4NZBA 4LMJA 4QH4A 4UY2A 3U8NA 2BYRA 5HEOA 2BG9E 2WN9A 4IREA 3U8KA 4Z90A 2BG9B 2XQ9A 4COFA 2XZ6A 4ZK4A 5LXBA 2YMDA 2XQ6A 4BQTA 2Y58A 4ZR6A 1UW6A 2XQ4A 2BJ0A 3RHWA 2XNUA 3TLVA 3SIOA 3WIPA 2C9TA 4Z91A 4ILBA 3C79A 4D01A 4WV9A 2X00A 2X00D 5BW2A 5L4EA 4TWDA 5AFKA 3SH1A 4ILCA 4X5TA 3TLTA 5L47A 2XYSA 3JAFA 3UQ7A 3PEOA 3UU8A 4TNWA 4A98A 2PGZA 2W8GA 5AFNA 3SQ6A 5FJVA 2BYQA 5HEUA 4F8HA 1I9BA 2Y57A 3WTKA 4BFQA 2Y56A 5AINA 5SYOA 2XQ7A 2YOEA 2XQ8A 3UU3A 4QABA 3U8JA 5HEHA 3U8MA 4HFEA 4TWFA 4ZZCA 5AFJA 3WTLA 2ZJUA 5LG3A 5KE4A 4LMKA 4ZK1A 3T4MA 4UM3A 4NPPA
chains in the Genus database with same CATH superfamily
4HFDA 2QC1B 2UZ6A 3EI0A 3ZKRA 4EZ1A 5BP0A 5AFLA 4ILAA 3TLUA 3RQWA 4FRRA 4IL9A 5HCMA 2WNLA 4XHEA 3WTJA 4AFTA 5J0ZA 5BRXA 3UU4A 4TNVA 3IGQA 3WTOA 3C84A 4UXUA 5AFHA 5HEGA 3UU6A 1UX2A 2BYPA 3LSVA 5HCJA 3ZDGA 2YN6A 5JMEA 4PIRA 2VL0A 5CO5A 4ALXA 5AFMA 3WTIA 4QAAA 4A97A 5KZUA 2YMEA 3RIFA 2XZ5A 2BR7A 5L4HA 4ZRUA 2BR8A 3RIAA 4UM3P 3UU5A 3TLSA 3UUBA 5IUXA 4UM1A 4AFGA 2BYSA 4ZZBA 2WZYA 4ZJSA 3WTMA 3JADA 4LMLA 3EHZA 3P50A 4TWHA 2WNJA 3PMZA 4XK9A 2Y54A 5TVCA 4HFIA 4HFBA 4QH1A 2Y7YA 3U8LA 3EAMA 2BG9C 4HFHA 2XYTA 3WTNA 5AFMB 3UQ4A 2WNCA 2ZJVA 2BG9A 4QACA 4AFHA 2YKSA 5J5GA 4IL4A 4UM3S 5J5IA 5J5HA 2XQAA 3RQUA 4ZJTA 3JAEA 3GUAA 2XNTA 4HFCA 3P4WA 3WTHA 3ZDHA 4HQPA 4QH5A 5J5FA 2BYNA 1UV6A 2XQ3A 2XNVA 4B5DA 3TLWA 3RI5A 3SQ9A 4DBMA 5CFBA 5HEJA 2PH9A 2W8FA 2XQ5A 4NZBA 4LMJA 4QH4A 4UY2A 3U8NA 2BYRA 5HEOA 2BG9E 2WN9A 4IREA 3U8KA 4Z90A 2BG9B 2XQ9A 4COFA 2XZ6A 4ZK4A 5LXBA 2YMDA 2XQ6A 4BQTA 2Y58A 4ZR6A 1UW6A 2XQ4A 2BJ0A 3RHWA 2XNUA 3TLVA 3SIOA 3WIPA 2C9TA 4Z91A 4ILBA 3C79A 4D01A 4WV9A 2X00A 2X00D 5BW2A 5L4EA 4TWDA 5AFKA 3SH1A 4ILCA 4X5TA 3TLTA 5L47A 2XYSA 3JAFA 3UQ7A 3PEOA 3UU8A 4TNWA 4A98A 2PGZA 2W8GA 5AFNA 3SQ6A 5FJVA 2BYQA 5HEUA 4F8HA 1I9BA 2Y57A 3WTKA 4BFQA 2Y56A 5AINA 5SYOA 2XQ7A 2YOEA 2XQ8A 3UU3A 4QABA 3U8JA 5HEHA 3U8MA 4HFEA 4TWFA 4ZZCA 5AFJA 3WTLA 2ZJUA 5LG3A 5KE4A 4LMKA 4ZK1A 3T4MA 4UM3A 4NPPA
chains in the Genus database with same CATH topology
4HFDA 2QC1B 2UZ6A 3EI0A 3ZKRA 4EZ1A 5BP0A 5AFLA 4ILAA 3TLUA 3RQWA 4FRRA 4IL9A 5HCMA 2WNLA 4XHEA 3WTJA 4AFTA 5J0ZA 5BRXA 3UU4A 4TNVA 3IGQA 3WTOA 3C84A 4UXUA 5AFHA 5HEGA 3UU6A 1UX2A 2BYPA 3LSVA 5HCJA 3ZDGA 2YN6A 5JMEA 4PIRA 2VL0A 5CO5A 4ALXA 5AFMA 3WTIA 4QAAA 4A97A 5KZUA 2YMEA 3RIFA 2XZ5A 2BR7A 5L4HA 4ZRUA 2BR8A 3RIAA 4UM3P 3UU5A 3TLSA 3UUBA 5IUXA 4UM1A 4AFGA 2BYSA 4ZZBA 2WZYA 4ZJSA 3WTMA 3JADA 4LMLA 3EHZA 3P50A 4TWHA 2WNJA 3PMZA 4XK9A 2Y54A 5TVCA 4HFIA 4HFBA 4QH1A 2Y7YA 3U8LA 3EAMA 2BG9C 4HFHA 2XYTA 3WTNA 5AFMB 3UQ4A 2WNCA 2ZJVA 2BG9A 4QACA 4AFHA 2YKSA 5J5GA 4IL4A 4UM3S 5J5IA 5J5HA 2XQAA 3RQUA 4ZJTA 3JAEA 3GUAA 2XNTA 4HFCA 3P4WA 3WTHA 3ZDHA 4HQPA 4QH5A 5J5FA 2BYNA 1UV6A 2XQ3A 2XNVA 4B5DA 3TLWA 3RI5A 3SQ9A 4DBMA 5CFBA 5HEJA 2PH9A 2W8FA 2XQ5A 4NZBA 4LMJA 4QH4A 4UY2A 3U8NA 2BYRA 5HEOA 2BG9E 2WN9A 4IREA 3U8KA 4Z90A 2BG9B 2XQ9A 4COFA 2XZ6A 4ZK4A 5LXBA 2YMDA 2XQ6A 4BQTA 2Y58A 4ZR6A 1UW6A 2XQ4A 2BJ0A 3RHWA 2XNUA 3TLVA 3SIOA 3WIPA 2C9TA 4Z91A 4ILBA 3C79A 4D01A 4WV9A 2X00A 2X00D 5BW2A 5L4EA 4TWDA 5AFKA 3SH1A 4ILCA 4X5TA 3TLTA 5L47A 2XYSA 3JAFA 3UQ7A 3PEOA 3UU8A 4TNWA 4A98A 2PGZA 2W8GA 5AFNA 3SQ6A 5FJVA 2BYQA 5HEUA 4F8HA 1I9BA 2Y57A 3WTKA 4BFQA 2Y56A 5AINA 5SYOA 2XQ7A 2YOEA 2XQ8A 3UU3A 4QABA 3U8JA 5HEHA 3U8MA 4HFEA 4TWFA 4ZZCA 5AFJA 3WTLA 2ZJUA 5LG3A 5KE4A 4LMKA 4ZK1A 3T4MA 4UM3A 4NPPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HFD A;  2QC1 B;  2UZ6 A;  3EI0 A;  3ZKR A;  4EZ1 A;  5BP0 A;  5AFL A;  4ILA A;  3TLU A;  3RQW A;  4FRR A;  4IL9 A;  5HCM A;  2WNL A;  4XHE A;  3WTJ A;  4AFT A;  5J0Z A;  5BRX A;  3UU4 A;  4TNV A;  3IGQ A;  3WTO A;  3C84 A;  4UXU A;  5AFH A;  5HEG A;  3UU6 A;  1UX2 A;  2BYP A;  3LSV A;  5HCJ A;  3ZDG A;  2YN6 A;  5JME A;  4PIR A;  2VL0 A;  5CO5 A;  4ALX A;  5AFM A;  3WTI A;  4QAA A;  4A97 A;  5KZU A;  2YME A;  3RIF A;  2XZ5 A;  2BR7 A;  5L4H A;  4ZRU A;  2BR8 A;  3RIA A;  4UM3 P;  3UU5 A;  3TLS A;  3UUB A;  5IUX A;  4UM1 A;  4AFG A;  2BYS A;  4ZZB A;  2WZY A;  4ZJS A;  3WTM A;  3JAD A;  4LML A;  3EHZ A;  3P50 A;  4TWH A;  2WNJ A;  3PMZ A;  4XK9 A;  2Y54 A;  5TVC A;  4HFI A;  4HFB A;  4QH1 A;  2Y7Y A;  3U8L A;  3EAM A;  2BG9 C;  4HFH A;  2XYT A;  3WTN A;  5AFM B;  3UQ4 A;  2WNC A;  2ZJV A;  2BG9 A;  4QAC A;  4AFH A;  2YKS A;  5J5G A;  4IL4 A;  4UM3 S;  5J5I A;  5J5H A;  2XQA A;  3RQU A;  4ZJT A;  3JAE A;  3GUA A;  2XNT A;  4HFC A;  3P4W A;  3WTH A;  3ZDH A;  4HQP A;  4QH5 A;  5J5F A;  2BYN A;  1UV6 A;  2XQ3 A;  2XNV A;  4B5D A;  3TLW A;  3RI5 A;  3SQ9 A;  4DBM A;  5CFB A;  5HEJ A;  2PH9 A;  2W8F A;  2XQ5 A;  4NZB A;  4LMJ A;  4QH4 A;  4UY2 A;  3U8N A;  2BYR A;  5HEO A;  2BG9 E;  2WN9 A;  4IRE A;  3U8K A;  4Z90 A;  2BG9 B;  2XQ9 A;  4COF A;  2XZ6 A;  4ZK4 A;  5LXB A;  2YMD A;  2XQ6 A;  4BQT A;  2Y58 A;  4ZR6 A;  1UW6 A;  2XQ4 A;  2BJ0 A;  3RHW A;  2XNU A;  3TLV A;  3SIO A;  3WIP A;  2C9T A;  4Z91 A;  4ILB A;  3C79 A;  4D01 A;  4WV9 A;  2X00 A;  2X00 D;  5BW2 A;  5L4E A;  4TWD A;  5AFK A;  3SH1 A;  4ILC A;  4X5T A;  3TLT A;  5L47 A;  2XYS A;  3JAF A;  3UQ7 A;  3PEO A;  3UU8 A;  4TNW A;  4A98 A;  2PGZ A;  2W8G A;  5AFN A;  3SQ6 A;  5FJV A;  2BYQ A;  5HEU A;  4F8H A;  1I9B A;  2Y57 A;  3WTK A;  4BFQ A;  2Y56 A;  5AIN A;  5SYO A;  2XQ7 A;  2YOE A;  2XQ8 A;  3UU3 A;  4QAB A;  3U8J A;  5HEH A;  3U8M A;  4HFE A;  4TWF A;  4ZZC A;  5AFJ A;  3WTL A;  2ZJU A;  5LG3 A;  5KE4 A;  4LMK A;  4ZK1 A;  3T4M A;  4UM3 A;  4NPP A; 
#chains in the Genus database with same CATH topology
 4HFD A;  2QC1 B;  2UZ6 A;  3EI0 A;  3ZKR A;  4EZ1 A;  5BP0 A;  5AFL A;  4ILA A;  3TLU A;  3RQW A;  4FRR A;  4IL9 A;  5HCM A;  2WNL A;  4XHE A;  3WTJ A;  4AFT A;  5J0Z A;  5BRX A;  3UU4 A;  4TNV A;  3IGQ A;  3WTO A;  3C84 A;  4UXU A;  5AFH A;  5HEG A;  3UU6 A;  1UX2 A;  2BYP A;  3LSV A;  5HCJ A;  3ZDG A;  2YN6 A;  5JME A;  4PIR A;  2VL0 A;  5CO5 A;  4ALX A;  5AFM A;  3WTI A;  4QAA A;  4A97 A;  5KZU A;  2YME A;  3RIF A;  2XZ5 A;  2BR7 A;  5L4H A;  4ZRU A;  2BR8 A;  3RIA A;  4UM3 P;  3UU5 A;  3TLS A;  3UUB A;  5IUX A;  4UM1 A;  4AFG A;  2BYS A;  4ZZB A;  2WZY A;  4ZJS A;  3WTM A;  3JAD A;  4LML A;  3EHZ A;  3P50 A;  4TWH A;  2WNJ A;  3PMZ A;  4XK9 A;  2Y54 A;  5TVC A;  4HFI A;  4HFB A;  4QH1 A;  2Y7Y A;  3U8L A;  3EAM A;  2BG9 C;  4HFH A;  2XYT A;  3WTN A;  5AFM B;  3UQ4 A;  2WNC A;  2ZJV A;  2BG9 A;  4QAC A;  4AFH A;  2YKS A;  5J5G A;  4IL4 A;  4UM3 S;  5J5I A;  5J5H A;  2XQA A;  3RQU A;  4ZJT A;  3JAE A;  3GUA A;  2XNT A;  4HFC A;  3P4W A;  3WTH A;  3ZDH A;  4HQP A;  4QH5 A;  5J5F A;  2BYN A;  1UV6 A;  2XQ3 A;  2XNV A;  4B5D A;  3TLW A;  3RI5 A;  3SQ9 A;  4DBM A;  5CFB A;  5HEJ A;  2PH9 A;  2W8F A;  2XQ5 A;  4NZB A;  4LMJ A;  4QH4 A;  4UY2 A;  3U8N A;  2BYR A;  5HEO A;  2BG9 E;  2WN9 A;  4IRE A;  3U8K A;  4Z90 A;  2BG9 B;  2XQ9 A;  4COF A;  2XZ6 A;  4ZK4 A;  5LXB A;  2YMD A;  2XQ6 A;  4BQT A;  2Y58 A;  4ZR6 A;  1UW6 A;  2XQ4 A;  2BJ0 A;  3RHW A;  2XNU A;  3TLV A;  3SIO A;  3WIP A;  2C9T A;  4Z91 A;  4ILB A;  3C79 A;  4D01 A;  4WV9 A;  2X00 A;  2X00 D;  5BW2 A;  5L4E A;  4TWD A;  5AFK A;  3SH1 A;  4ILC A;  4X5T A;  3TLT A;  5L47 A;  2XYS A;  3JAF A;  3UQ7 A;  3PEO A;  3UU8 A;  4TNW A;  4A98 A;  2PGZ A;  2W8G A;  5AFN A;  3SQ6 A;  5FJV A;  2BYQ A;  5HEU A;  4F8H A;  1I9B A;  2Y57 A;  3WTK A;  4BFQ A;  2Y56 A;  5AIN A;  5SYO A;  2XQ7 A;  2YOE A;  2XQ8 A;  3UU3 A;  4QAB A;  3U8J A;  5HEH A;  3U8M A;  4HFE A;  4TWF A;  4ZZC A;  5AFJ A;  3WTL A;  2ZJU A;  5LG3 A;  5KE4 A;  4LMK A;  4ZK1 A;  3T4M A;  4UM3 A;  4NPP A; 
#chains in the Genus database with same CATH homology
 4HFD A;  2QC1 B;  2UZ6 A;  3EI0 A;  3ZKR A;  4EZ1 A;  5BP0 A;  5AFL A;  4ILA A;  3TLU A;  3RQW A;  4FRR A;  4IL9 A;  5HCM A;  2WNL A;  4XHE A;  3WTJ A;  4AFT A;  5J0Z A;  5BRX A;  3UU4 A;  4TNV A;  3IGQ A;  3WTO A;  3C84 A;  4UXU A;  5AFH A;  5HEG A;  3UU6 A;  1UX2 A;  2BYP A;  3LSV A;  5HCJ A;  3ZDG A;  2YN6 A;  5JME A;  4PIR A;  2VL0 A;  5CO5 A;  4ALX A;  5AFM A;  3WTI A;  4QAA A;  4A97 A;  5KZU A;  2YME A;  3RIF A;  2XZ5 A;  2BR7 A;  5L4H A;  4ZRU A;  2BR8 A;  3RIA A;  4UM3 P;  3UU5 A;  3TLS A;  3UUB A;  5IUX A;  4UM1 A;  4AFG A;  2BYS A;  4ZZB A;  2WZY A;  4ZJS A;  3WTM A;  3JAD A;  4LML A;  3EHZ A;  3P50 A;  4TWH A;  2WNJ A;  3PMZ A;  4XK9 A;  2Y54 A;  5TVC A;  4HFI A;  4HFB A;  4QH1 A;  2Y7Y A;  3U8L A;  3EAM A;  2BG9 C;  4HFH A;  2XYT A;  3WTN A;  5AFM B;  3UQ4 A;  2WNC A;  2ZJV A;  2BG9 A;  4QAC A;  4AFH A;  2YKS A;  5J5G A;  4IL4 A;  4UM3 S;  5J5I A;  5J5H A;  2XQA A;  3RQU A;  4ZJT A;  3JAE A;  3GUA A;  2XNT A;  4HFC A;  3P4W A;  3WTH A;  3ZDH A;  4HQP A;  4QH5 A;  5J5F A;  2BYN A;  1UV6 A;  2XQ3 A;  2XNV A;  4B5D A;  3TLW A;  3RI5 A;  3SQ9 A;  4DBM A;  5CFB A;  5HEJ A;  2PH9 A;  2W8F A;  2XQ5 A;  4NZB A;  4LMJ A;  4QH4 A;  4UY2 A;  3U8N A;  2BYR A;  5HEO A;  2BG9 E;  2WN9 A;  4IRE A;  3U8K A;  4Z90 A;  2BG9 B;  2XQ9 A;  4COF A;  2XZ6 A;  4ZK4 A;  5LXB A;  2YMD A;  2XQ6 A;  4BQT A;  2Y58 A;  4ZR6 A;  1UW6 A;  2XQ4 A;  2BJ0 A;  3RHW A;  2XNU A;  3TLV A;  3SIO A;  3WIP A;  2C9T A;  4Z91 A;  4ILB A;  3C79 A;  4D01 A;  4WV9 A;  2X00 A;  2X00 D;  5BW2 A;  5L4E A;  4TWD A;  5AFK A;  3SH1 A;  4ILC A;  4X5T A;  3TLT A;  5L47 A;  2XYS A;  3JAF A;  3UQ7 A;  3PEO A;  3UU8 A;  4TNW A;  4A98 A;  2PGZ A;  2W8G A;  5AFN A;  3SQ6 A;  5FJV A;  2BYQ A;  5HEU A;  4F8H A;  1I9B A;  2Y57 A;  3WTK A;  4BFQ A;  2Y56 A;  5AIN A;  5SYO A;  2XQ7 A;  2YOE A;  2XQ8 A;  3UU3 A;  4QAB A;  3U8J A;  5HEH A;  3U8M A;  4HFE A;  4TWF A;  4ZZC A;  5AFJ A;  3WTL A;  2ZJU A;  5LG3 A;  5KE4 A;  4LMK A;  4ZK1 A;  3T4M A;  4UM3 A;  4NPP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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