5JLVC

Receptor binding domain of botulinum neurotoxin a in complex with human glycosylated sv2c
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
97
structure length
97
Chain Sequence
EGRVERDKYANFTINFTMENQIHTGMEYDNGRFIGVKFKSVTFKDSVFKSCTFEDVTSVNTYFKNCTFIDTVFDNTDFEPYKFIDSEFKNCSFFHNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Botulinum neurotoxin type A
publication title N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A.
pubmed doi rcsb
source organism Clostridium botulinum
total genus 38
structure length 97
sequence length 97
chains with identical sequence D
ec nomenclature
pdb deposition date 2016-04-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 5jlvC00
5JLVC 2F3LA 2BM5A 2G0YA 2J8IA 2BM6A 5JMCB 2BM4A 3N90A 2BM7A 2W7ZA 4JRAC
chains in the Genus database with same CATH superfamily
2QX3A 4OM9A 1OOCA 2X6XA 4URRA 2QZAA 1BN8A 5JMCB 1HG8A 2O6WA 2BX6A 2BM7A 2VBKA 2ODLA 4YZAA 4YZXA 2PECA 2X6YA 3P4GA 1DBGA 4U49A 1KCDA 1LLWA 4YZQA 4XKWA 1QJVA 3GQ7A 3B8YA 1K4ZA 1O88A 4OJ5A 2XTXA 2Z8GA 2O0VA 2UVEA 2O1DA 2X3HA 1EA0A 4YELA 1RMGA 3WWGA 4YC5A 4AVZA 4V02C 2W7ZA 1EZGA 4NK6A 4YFOA 1O8KA 1TYVA 5JLVC 3DU1X 2VFNA 3NAWA 1KQ5A 1JTAA 2VFOA 2XC1A 2BM6A 3EQNA 3NB2A 3PSSA 1GQ8A 1VBLA 3FY3A 3PETA 4XKVA 4XONA 2NSPA 1OFDA 2J8KA 3B90A 1K5CA 1IDKA 1BHEA 2UVFA 4OJLA 1KCCA 2B0RA 2IQ7A 2NT6A 2XT2A 1H80A 3LYCA 3GQ8A 4XLFA 5DNSA 1QCXA 1O8IA 3UW0A 1JRGA 2BM5A 1PXZA 2VJIA 1QQ1A 4XM3A 1QRCA 4XNFA 4Z05A 3BH7B 3KRGA 2X85A 4XR6A 1AIRA 1IA5A 2VJJA 3N6ZA 1DBOA 3VSVA 2VFMA 2INUA 3RIQA 1CZFA 2NSTA 4XOTA 2QXZA 2O04A 1PLUA 4YEIA 4Z06A 4I84A 4XMYA 2BM4A 4PMHA 1KTWA 1PE9A 2XT4A 3JX8A 1LM1A 4Z03A 3LJYA 1O8LA 1IB4A 1IDJA 1OGOX 2YUHA 2F3LA 2PYGA 1EE6A 3TH0A 3LMWA 4W8QA 4XLCA 3VMVA 2XTYA 1RWRA 3AK5A 1OFLA 4HWVA 1TYXA 3ML3A 1O8HA 1TYWA 1O8DA 3JURA 5C1CA 4XLEA 1NHCA 3EQOA 3N90A 3T9GA 1L1IA 4XOPA 4EW9A 3SZEA 4YEJA 3B4NA 5C1EA 1O8FA 4YZ0A 3VSUA 4OZYA 4XLAA 2VFPA 4OJOA 1QA2A 4NK8A 3VSTA 2J8IA 4XN3A 2BSPA 2XTWA 2VBMA 3H09A 4W8TA 4YDTA 2EWEA 2NTPA 4KH3A 2NTBA 1O8GA 1TSPA 4YCQA 4XORA 2NZMA 1DABA 4XLHA 1XG2A 1OFMA 4OJPA 4C2LA 2VBEA 3SY2A 3BH6B 4W8SA 2QY1A 3ZSCA 3ZPPA 4XN0A 3GQ9A 3SYJA 2IOUG 2PYHA 2QYUA 1WMRA 4XL9A 4MXNA 1O8JA 3SUCA 2O0WA 1TYUA 1LLZA 2VFQA 4MR0A 4OJ6A 1QA3A 1WXRA 2V5IA 1HF2A 1OFEA 4XQFA 1OGMX 1CLWA 1QRBA 3VMWA 4OZZA 2NTQA 4OPWA 3SQVA 1K8FA 2X6WA 4U4BA 2NT9A 4W8RA 2G0YA 3GQAA 5AMVA 3GRHA 1O8EA 2O17A 1O8MA 1X0CA 2INVA 4JRAC 3PSZA 1RU4A 1QA1A
chains in the Genus database with same CATH topology
3ML3A 1TYWA 4OM9A 3BH6B 4OJLA 2B0RA 5JMCB 3SYJA 2IOUG 3N90A 3LYCA 2BX6A 2BM7A 1QA1A 3P4GA 3SZEA 2BM5A 1QQ1A 1TYUA 1QRCA 3BH7B 2VFQA 1K4ZA 2VFPA 4OJ6A 4OJOA 1QA3A 3N6ZA 1WXRA 4OJ5A 2VFMA 3RIQA 2V5IA 1QA2A 1HF2A 2J8IA 1CLWA 1QRBA 2BM4A 4V02C 3H09A 2W7ZA 3JX8A 4OPWA 1K8FA 3LJYA 1TYVA 2YUHA 5JLVC 3TH0A 2F3LA 2VFNA 1KQ5A 4KH3A 2G0YA 2VFOA 2BM6A 2XC1A 1TSPA 3AK5A 4JRAC 3PETA 4OJPA 1TYXA 1DABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JLV C;  2F3L A;  2BM5 A;  2G0Y A;  2J8I A;  2BM6 A;  5JMC B;  2BM4 A;  3N90 A;  2BM7 A;  2W7Z A;  4JRA C; 
#chains in the Genus database with same CATH topology
 2QX3 A;  4OM9 A;  1OOC A;  2X6X A;  4URR A;  2QZA A;  1BN8 A;  5JMC B;  1HG8 A;  2O6W A;  2BX6 A;  2BM7 A;  2VBK A;  2ODL A;  4YZA A;  4YZX A;  2PEC A;  2X6Y A;  3P4G A;  1DBG A;  4U49 A;  1KCD A;  1LLW A;  4YZQ A;  4XKW A;  1QJV A;  3GQ7 A;  3B8Y A;  1K4Z A;  1O88 A;  4OJ5 A;  2XTX A;  2Z8G A;  2O0V A;  2UVE A;  2O1D A;  2X3H A;  1EA0 A;  4YEL A;  1RMG A;  3WWG A;  4YC5 A;  4AVZ A;  4V02 C;  2W7Z A;  1EZG A;  4NK6 A;  4YFO A;  1O8K A;  1TYV A;  5JLV C;  3DU1 X;  2VFN A;  3NAW A;  1KQ5 A;  1JTA A;  2VFO A;  2XC1 A;  2BM6 A;  3EQN A;  3NB2 A;  3PSS A;  1GQ8 A;  1VBL A;  3FY3 A;  3PET A;  4XKV A;  4XON A;  2NSP A;  1OFD A;  2J8K A;  3B90 A;  1K5C A;  1IDK A;  1BHE A;  2UVF A;  4OJL A;  1KCC A;  2B0R A;  2IQ7 A;  2NT6 A;  2XT2 A;  1H80 A;  3LYC A;  3GQ8 A;  4XLF A;  5DNS A;  1QCX A;  1O8I A;  3UW0 A;  1JRG A;  2BM5 A;  1PXZ A;  2VJI A;  1QQ1 A;  4XM3 A;  1QRC A;  4XNF A;  4Z05 A;  3BH7 B;  3KRG A;  2X85 A;  4XR6 A;  1AIR A;  1IA5 A;  2VJJ A;  3N6Z A;  1DBO A;  3VSV A;  2VFM A;  2INU A;  3RIQ A;  1CZF A;  2NST A;  4XOT A;  2QXZ A;  2O04 A;  1PLU A;  4YEI A;  4Z06 A;  4I84 A;  4XMY A;  2BM4 A;  4PMH A;  1KTW A;  1PE9 A;  2XT4 A;  3JX8 A;  1LM1 A;  4Z03 A;  3LJY A;  1O8L A;  1IB4 A;  1IDJ A;  1OGO X;  2YUH A;  2F3L A;  2PYG A;  1EE6 A;  3TH0 A;  3LMW A;  4W8Q A;  4XLC A;  3VMV A;  2XTY A;  1RWR A;  3AK5 A;  1OFL A;  4HWV A;  1TYX A;  3ML3 A;  1O8H A;  1TYW A;  1O8D A;  3JUR A;  5C1C A;  4XLE A;  1NHC A;  3EQO A;  3N90 A;  3T9G A;  1L1I A;  4XOP A;  4EW9 A;  3SZE A;  4YEJ A;  3B4N A;  5C1E A;  1O8F A;  4YZ0 A;  3VSU A;  4OZY A;  4XLA A;  2VFP A;  4OJO A;  1QA2 A;  4NK8 A;  3VST A;  2J8I A;  4XN3 A;  2BSP A;  2XTW A;  2VBM A;  3H09 A;  4W8T A;  4YDT A;  2EWE A;  2NTP A;  4KH3 A;  2NTB A;  1O8G A;  1TSP A;  4YCQ A;  4XOR A;  2NZM A;  1DAB A;  4XLH A;  1XG2 A;  1OFM A;  4OJP A;  4C2L A;  2VBE A;  3SY2 A;  3BH6 B;  4W8S A;  2QY1 A;  3ZSC A;  3ZPP A;  4XN0 A;  3GQ9 A;  3SYJ A;  2IOU G;  2PYH A;  2QYU A;  1WMR A;  4XL9 A;  4MXN A;  1O8J A;  3SUC A;  2O0W A;  1TYU A;  1LLZ A;  2VFQ A;  4MR0 A;  4OJ6 A;  1QA3 A;  1WXR A;  2V5I A;  1HF2 A;  1OFE A;  4XQF A;  1OGM X;  1CLW A;  1QRB A;  3VMW A;  4OZZ A;  2NTQ A;  4OPW A;  3SQV A;  1K8F A;  2X6W A;  4U4B A;  2NT9 A;  4W8R A;  2G0Y A;  3GQA A;  5AMV A;  3GRH A;  1O8E A;  2O17 A;  1O8M A;  1X0C A;  2INV A;  4JRA C;  3PSZ A;  1RU4 A;  1QA1 A; 
#chains in the Genus database with same CATH homology
 3ML3 A;  1TYW A;  4OM9 A;  3BH6 B;  4OJL A;  2B0R A;  5JMC B;  3SYJ A;  2IOU G;  3N90 A;  3LYC A;  2BX6 A;  2BM7 A;  1QA1 A;  3P4G A;  3SZE A;  2BM5 A;  1QQ1 A;  1TYU A;  1QRC A;  3BH7 B;  2VFQ A;  1K4Z A;  2VFP A;  4OJ6 A;  4OJO A;  1QA3 A;  3N6Z A;  1WXR A;  4OJ5 A;  2VFM A;  3RIQ A;  2V5I A;  1QA2 A;  1HF2 A;  2J8I A;  1CLW A;  1QRB A;  2BM4 A;  4V02 C;  3H09 A;  2W7Z A;  3JX8 A;  4OPW A;  1K8F A;  3LJY A;  1TYV A;  2YUH A;  5JLV C;  3TH0 A;  2F3L A;  2VFN A;  1KQ5 A;  4KH3 A;  2G0Y A;  2VFO A;  2BM6 A;  2XC1 A;  1TSP A;  3AK5 A;  4JRA C;  3PET A;  4OJP A;  1TYX A;  1DAB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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