5JSNB

Bcl2-inhibitor complex
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
115
structure length
115
Chain Sequence
DPKKVLDKAKDEAENRVRELKQRLEELYKEARKLDLTQEMRQELVDKARAASLQANGDIFYAILRALAEAEKLKKAGLVNSQQLDELKRRLEELAEEARRKAEKLRDEFRLKLEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/inhibitor
molecule keywords Apoptosis regulator Bcl-2
publication title Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer.
pubmed doi rcsb
source organism Homo sapiens
total genus 54
structure length 115
sequence length 115
chains with identical sequence D
ec nomenclature
pdb deposition date 2016-05-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.20 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 5jsnB00
1EK8A 4KB4A 4KDDA 3LF9A 1Y698 4JLRC 5JSBB 1EH1A 5JSNB 1WQFA 1IS1A 1WQGA 4GFQA 1ISEA 1DD5A 1WQHA 1GE9A 4KC6A 5MLC9 4KB2A 4OYDB 4L8IA 4KAWX 3LHPS
chains in the Genus database with same CATH superfamily
4KDDA 4AN8A 4QIWA 3DU5A 2NVYA 1LPQA 2R7ZA 3SJRA 4Q5GA 1WQFA 1IS1A 1WQGA 2BE5D 4IP8A 1Y1WA 1TL8A 1I3QA 1ISEA 1I50A 3K5LA 3K5NA 2JA6A 2A68D 2WAQA 2O5JD 5C9HA 4OYDB 4C2MA 2Y0SA 1HQMD 1TWGA 3GTMA 3IAYA 1Y698 4NOKA 3H0GA 1ZYRD 3GTPA 4AYBA 1A35A 1YNND 1MIUA 1EJ9A 2JA5A 4GFQA 1SFOA 2E2HA 1GE9A 1WQHA 2F4QA 3GTJA 3HKZA 1TWCA 5MLC9 4FYDA 3GTGA 4NOMA 4L8IA 4KAWX 2R4GA 1SEUA 3FKIA 4IP9A 1R49A 2CW0D 1I6VD 1SC7A 1NH3A 4KB4A 3LF9A 3GTLA 4LMOA 4FGUA 4JLRC 1YNJD 3WVOA 1EH1A 2E2IA 1TWHA 1SMYD 5JSNB 2R92A 1R9TA 2JA7A 4KC6A 3GTKA 1RR8C 3DU6A 3P9AA 1WCMA 4D3ZA 1T8IA 1K83A 3LHPS 3GTOA 4AHCA 4H3TA 4F3EA 1IW7D 3K58A 1EK8A 2YU9A 3KYLA 1A36A 2PMZA 2A6ED 1Q8IA 3GTQA 1TGOA 1RRJA 5JSBB 4FXDA 2B63A 1R5ZA 3K5MA 3K59A 3K57A 1DD5A 4Q5VA 1V9MA 3K5OA 1Y1VA 4NOLA 1K4TA 1TWAA 4KB2A 4O26A 2VUMA 3M4AA 4QCLA 1TWFA 2A69D 2WB1A 4EJ3A 3MAQA 3CQZA 2NVXA 2B9SB 2A6HD 2R93A 4D3YA 1K4SA 5CQGA 1A31A
chains in the Genus database with same CATH topology
4KDDA 4AN8A 4QIWA 3DU5A 2NVYA 1LPQA 2R7ZA 3SJRA 4Q5GA 1WQFA 1IS1A 1WQGA 2BE5D 4IP8A 1Y1WA 1TL8A 1I3QA 1ISEA 1I50A 3K5LA 3K5NA 2JA6A 2A68D 2WAQA 2O5JD 5C9HA 4OYDB 4C2MA 2Y0SA 1HQMD 1TWGA 3GTMA 3IAYA 1Y698 4NOKA 3H0GA 1ZYRD 3GTPA 4AYBA 1A35A 1YNND 1MIUA 1EJ9A 2JA5A 4GFQA 1SFOA 2E2HA 1GE9A 1WQHA 2F4QA 3GTJA 3HKZA 1TWCA 5MLC9 4FYDA 3GTGA 4NOMA 4L8IA 4KAWX 2R4GA 1SEUA 3FKIA 4IP9A 1R49A 2CW0D 1I6VD 1SC7A 1NH3A 4KB4A 3LF9A 3GTLA 4LMOA 4FGUA 4JLRC 1YNJD 3WVOA 1EH1A 2E2IA 1TWHA 1SMYD 5JSNB 2R92A 1R9TA 2JA7A 4KC6A 3GTKA 1RR8C 3DU6A 3P9AA 1WCMA 4D3ZA 1T8IA 1K83A 3LHPS 3GTOA 4AHCA 4H3TA 4F3EA 1IW7D 3K58A 1EK8A 2YU9A 3KYLA 1A36A 2PMZA 2A6ED 1Q8IA 3GTQA 1TGOA 1RRJA 5JSBB 4FXDA 2B63A 1R5ZA 3K5MA 3K59A 3K57A 1DD5A 4Q5VA 1V9MA 3K5OA 1Y1VA 4NOLA 1K4TA 1TWAA 4KB2A 4O26A 2VUMA 3M4AA 4QCLA 1TWFA 2A69D 2WB1A 4EJ3A 3MAQA 3CQZA 2NVXA 2B9SB 2A6HD 2R93A 4D3YA 1K4SA 5CQGA 1A31A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EK8 A;  4KB4 A;  4KDD A;  3LF9 A;  1Y69 8;  4JLR C;  5JSB B;  1EH1 A;  5JSN B;  1WQF A;  1IS1 A;  1WQG A;  4GFQ A;  1ISE A;  1DD5 A;  1WQH A;  1GE9 A;  4KC6 A;  5MLC 9;  4KB2 A;  4OYD B;  4L8I A;  4KAW X;  3LHP S; 
#chains in the Genus database with same CATH topology
 4KDD A;  4AN8 A;  4QIW A;  3DU5 A;  2NVY A;  1LPQ A;  2R7Z A;  3SJR A;  4Q5G A;  1WQF A;  1IS1 A;  1WQG A;  2BE5 D;  4IP8 A;  1Y1W A;  1TL8 A;  1I3Q A;  1ISE A;  1I50 A;  3K5L A;  3K5N A;  2JA6 A;  2A68 D;  2WAQ A;  2O5J D;  5C9H A;  4OYD B;  4C2M A;  2Y0S A;  1HQM D;  1TWG A;  3GTM A;  3IAY A;  1Y69 8;  4NOK A;  3H0G A;  1ZYR D;  3GTP A;  4AYB A;  1A35 A;  1YNN D;  1MIU A;  1EJ9 A;  2JA5 A;  4GFQ A;  1SFO A;  2E2H A;  1GE9 A;  1WQH A;  2F4Q A;  3GTJ A;  3HKZ A;  1TWC A;  5MLC 9;  4FYD A;  3GTG A;  4NOM A;  4L8I A;  4KAW X;  2R4G A;  1SEU A;  3FKI A;  4IP9 A;  1R49 A;  2CW0 D;  1I6V D;  1SC7 A;  1NH3 A;  4KB4 A;  3LF9 A;  3GTL A;  4LMO A;  4FGU A;  4JLR C;  1YNJ D;  3WVO A;  1EH1 A;  2E2I A;  1TWH A;  1SMY D;  5JSN B;  2R92 A;  1R9T A;  2JA7 A;  4KC6 A;  3GTK A;  1RR8 C;  3DU6 A;  3P9A A;  1WCM A;  4D3Z A;  1T8I A;  1K83 A;  3LHP S;  3GTO A;  4AHC A;  4H3T A;  4F3E A;  1IW7 D;  3K58 A;  1EK8 A;  2YU9 A;  3KYL A;  1A36 A;  2PMZ A;  2A6E D;  1Q8I A;  3GTQ A;  1TGO A;  1RRJ A;  5JSB B;  4FXD A;  2B63 A;  1R5Z A;  3K5M A;  3K59 A;  3K57 A;  1DD5 A;  4Q5V A;  1V9M A;  3K5O A;  1Y1V A;  4NOL A;  1K4T A;  1TWA A;  4KB2 A;  4O26 A;  2VUM A;  3M4A A;  4QCL A;  1TWF A;  2A69 D;  2WB1 A;  4EJ3 A;  3MAQ A;  3CQZ A;  2NVX A;  2B9S B;  2A6H D;  2R93 A;  4D3Y A;  1K4S A;  5CQG A;  1A31 A; 
#chains in the Genus database with same CATH homology
 4KDD A;  4AN8 A;  4QIW A;  3DU5 A;  2NVY A;  1LPQ A;  2R7Z A;  3SJR A;  4Q5G A;  1WQF A;  1IS1 A;  1WQG A;  2BE5 D;  4IP8 A;  1Y1W A;  1TL8 A;  1I3Q A;  1ISE A;  1I50 A;  3K5L A;  3K5N A;  2JA6 A;  2A68 D;  2WAQ A;  2O5J D;  5C9H A;  4OYD B;  4C2M A;  2Y0S A;  1HQM D;  1TWG A;  3GTM A;  3IAY A;  1Y69 8;  4NOK A;  3H0G A;  1ZYR D;  3GTP A;  4AYB A;  1A35 A;  1YNN D;  1MIU A;  1EJ9 A;  2JA5 A;  4GFQ A;  1SFO A;  2E2H A;  1GE9 A;  1WQH A;  2F4Q A;  3GTJ A;  3HKZ A;  1TWC A;  5MLC 9;  4FYD A;  3GTG A;  4NOM A;  4L8I A;  4KAW X;  2R4G A;  1SEU A;  3FKI A;  4IP9 A;  1R49 A;  2CW0 D;  1I6V D;  1SC7 A;  1NH3 A;  4KB4 A;  3LF9 A;  3GTL A;  4LMO A;  4FGU A;  4JLR C;  1YNJ D;  3WVO A;  1EH1 A;  2E2I A;  1TWH A;  1SMY D;  5JSN B;  2R92 A;  1R9T A;  2JA7 A;  4KC6 A;  3GTK A;  1RR8 C;  3DU6 A;  3P9A A;  1WCM A;  4D3Z A;  1T8I A;  1K83 A;  3LHP S;  3GTO A;  4AHC A;  4H3T A;  4F3E A;  1IW7 D;  3K58 A;  1EK8 A;  2YU9 A;  3KYL A;  1A36 A;  2PMZ A;  2A6E D;  1Q8I A;  3GTQ A;  1TGO A;  1RRJ A;  5JSB B;  4FXD A;  2B63 A;  1R5Z A;  3K5M A;  3K59 A;  3K57 A;  1DD5 A;  4Q5V A;  1V9M A;  3K5O A;  1Y1V A;  4NOL A;  1K4T A;  1TWA A;  4KB2 A;  4O26 A;  2VUM A;  3M4A A;  4QCL A;  1TWF A;  2A69 D;  2WB1 A;  4EJ3 A;  3MAQ A;  3CQZ A;  2NVX A;  2B9S B;  2A6H D;  2R93 A;  4D3Y A;  1K4S A;  5CQG A;  1A31 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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