5K3GA

Crystals structure of acyl-coa oxidase-1 in caenorhabditis elegans, apo form-i
Total Genus 266
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
266
sequence length
668
structure length
629
Chain Sequence
VHLNKTIQEGDNPDLTAERLTATFDTHAMAAQIYGGEMRARRRREITAKLAEIPELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTDAGELYHLNNEVLGIEGNPMALHGVMFIPALNAQASDEQQAKWLIRALRREIIGTYAQTEMGHGTNLQNLETTATYDIGTQEFVLHTPKITALKWWPGNLGKSSNYAVVVAHMYIKGKNFGPHTFMVPLRDEKTHKPLPGITIGDIGPKMAYNIVDNGFLGFNNYRIPRTNLLMRHTKVEADGTYIYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYAFQFAGAETVKLYERDLHALTSGLKSVVTHQTGEGIEQARMACGGHGYSMASYISEIYGVAIGGVMLLQLARYLVKSAALVKSGKASQLGPLVAYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSLLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLNKTDVLPSVDTYLKPMMEKA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans.
pubmed doi rcsb
source organism Caenorhabditis elegans
molecule tags Oxidoreductase
molecule keywords Acyl-coenzyme A oxidase
total genus 266
structure length 629
sequence length 668
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 5k3gA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3gA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3gA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 5k3gA02
4HR3A 1QDBA 4OO2A 1EGEA 3GQTA 1R2JA 4L3YA 3SXQA 3B96A 2Z1QA 3AFEA 3GM6A 2FONA 2YYMA 3SCEA 4O5MA 3LG1A 3TORA 3BNJA 3FCJA 3MKHA 2VR0A 2CX9A 2YYJA 1JQIA 3D9DA 2IX5A 4KCFA 2OR0A 2OT4A 2JIFA 1W07A 3BNGA 4L1FA 3MPJA 2RF7A 3HWCA 2R0MA 5K3IA 2YYGA 2C0UA 4Q1OA 4NXLA 3MXLA 3UBRA 1U8VA 4W9UA 3BNFA 4L3ZA 4DOYA 2E81A 2R0NA 4M9AA 2IX6A 1UKWA 4N5FA 4Q17A 2YYKA 4ZXVA 4RM7A 2RDZA 3SWOA 4U83A 2J7AA 1IVHA 2UXWA 3SF6A 1UDYA 3D9FA 3FO3A 2JBSA 2ZAFA 2DVLA 2JBRA 2WBIA 4L38A 3D9EA 4JEKA 2REHA 3MDEA 1FS8A 1IS2A 3GNCA 1OAHA 2RFQA 5K3GA 2A1TA 5K3HA 3MDDA 2EBAA 4Q5BA 2E80A 3MPIA 3TTBA 4G5EA 3P4TA 2DDHA 3OWAA 3EONA 4IV6A 4X28C 4Q0TA 3D9GA 1WS9A 2VIGA 1FS9A 1BUCA 4Q5CA 1EGDA 4IRNA 2C12A 3BNHA 3D6BA 3II9A 1FS7A 3D1IA 5K3JA 4Q4UA 3L1TA 3RKHA 3F29A 1RX0A 4XVXA 2PG0A 2ZO5A 4X28A 3MMOA 4WJYA 2JBTA 1T9GA 2YYLA 3OIBA 2D29A 1EGCA 3X0XA 3NF4A 3M9VA 3OWMA 1SIQA 3LGQA 3X0YA 3PFDA 4P13A 3AFFA 4ZYJA 3R7KA 1SIRA 3EOMA 1GU6A 3S7WA 3UU9A 4L3XA 2YYIA 4KTOA
chains in the Genus database with same CATH superfamily
4HR3A 1QDBA 1X90A 4H7QA 4AI6A 3C46A 4FF2A 2BU7A 4OO2A 1EGEA 3GQTA 1PI1A 1R2JA 4L3YA 3SXQA 3B96A 2Z1QA 3AFEA 1GJVA 1GKZA 2OEVA 2FONA 2QR4A 2XS1A 2YYMA 3GM6A 4AKIA 3TZ2A 2Q8FA 3SCEA 4O5MA 3LG1A 3TORA 3BNJA 3FCJA 2AZEA 4FZ4A 3MKHA 2EBFX 1XFWA 2VR0A 2CX9A 2YYJA 4L3XA 4MPEA 1JQIA 1JM6A 2ZKJA 3D9DA 2IX5A 4KCFA 2OR0A 4MP7A 2OT4A 2JIFA 4P79A 1W07A 2Q8IA 1K93A 2BTZA 3BNGA 4L1FA 3MPJA 2RF7A 2XS8A 3HWCA 2R0MA 5K3IA 2YYGA 1Y0VA 4J1VA 2C0UA 2HJNA 4HKRA 4LQSB 4LQQB 4MPNA 4Q1OA 4NXLA 5M4PA 1X8ZA 2Q8HA 3MXLA 1RP3A 2YGWA 5B5VA 3UBRA 1U8VA 3DJLA 4W9UA 3BNFA 3C2PA 4L3ZA 4DOYA 5M4KA 2E81A 2R0NA 4M9AA 1SC5A 5BRMA 2IX6A 3VKHA 4KSAA 1K8TA 1UKWA 4N5FA 2R05A 3VKGA 2LFWA 4Q17A 2YYKA 4ZXVA 4RM7A 2RDZA 3SWOA 3CRLA 2AO2A 3TZ0A 4U83A 2J7AA 1IVHA 2UXWA 3SF6A 4MP2A 1UDYA 3D9FA 3FO3A 3Q23A 2OEXA 1S26A 2JBSA 2ZAFA 4V25A 2DVLA 2XQRB 2JBRA 4JIOA 1XFXA 2R03A 4E01A 2WBIA 1K90A 2FP1A 4L38A 5B5WA 4AKHA 3D9EA 1XFUA 4QICA 4FF3A 4JEKA 2REHA 3MDEA 1FS8A 1IS2A 3GNCA 1OAHA 2RFQA 2CJ5A 4E00A 5B6BA 5K3GA 3CRKA 1X91A 2A1TA 5K3HA 3MDDA 5J71A 2EBAA 4Q5BA 2E80A 1XFZA 3Q22A 4V26A 3MPIA 3TTBA 1XFVA 3X29A 4KSFA 4G5EA 3P4TA 2DDHA 2OJQA 3C3LA 3U33A 3OWAA 5J6AA 3EONA 4IV6A 4X28C 1LVCA 1XG2B 4Q0TA 4E02A 3D9GA 2CJ8A 4H81A 1WS9A 2VIGA 1FS9A 2CJ4A 3D2RA 1Y8PA 4KS9A 1BUCA 1RJ1A 4G97A 4Q5CA 1EGDA 4IRNA 2C12A 3BNHA 1SK6A 3D6BA 3II9A 1FS7A 2BU5A 3D1IA 5K3JA 4DZYA 2BU8A 3L1TA 4Q4UA 3F29A 1RX0A 3RKHA 4XVXA 3TZ5A 2PG0A 2ZO5A 2FP2A 4X28A 4HKSA 3MMOA 2PNRA 4WJYA 2BU2A 4H85A 2JBTA 1T9GA 3Q0AA 2YYLA 3OIBA 1R3BA 5EZ3A 2BU6A 4FF1A 2D29A 2EBHX 3TZ4A 5BRKA 4AKGA 5M4NA 2R02A 2GBBA 2EC5A 3CE2A 1EGCA 3X0XA 3NF4A 3M9VA 2CJ6A 3OWMA 4MPCA 1SIQA 3LGQA 4F0XA 1XFYA 1Y8NA 2E0AA 3X0YA 2Q8GA 2PO4A 5M4MA 4JIZA 3PFDA 2CJ7A 2F6LA 1PK0A 3KMLA 4P13A 3AFFA 4ZYJA 3VADA 2ZDXA 3R7KA 3N0RA 5GJWE 2VF1A 1RJ4A 1SIRA 3EOMA 1Y8OA 2ZDYA 1GU6A 3S7WA 3UU9A 4FF4A 3Q24A 1GKXA 2YYIA 5GJVE 4KTOA
chains in the Genus database with same CATH topology
4HR3A 1QDBA 4OO2A 1EGEA 3GQTA 1R2JA 4L3YA 3SXQA 3B96A 2Z1QA 3AFEA 3GM6A 2FONA 2YYMA 3SCEA 4O5MA 3LG1A 3TORA 3BNJA 3FCJA 3MKHA 2VR0A 2CX9A 2YYJA 1JQIA 3D9DA 2IX5A 4KCFA 2OR0A 2OT4A 2JIFA 1W07A 3BNGA 4L1FA 3MPJA 2RF7A 3HWCA 2R0MA 5K3IA 2YYGA 2C0UA 4Q1OA 4NXLA 3MXLA 3UBRA 1U8VA 4W9UA 3BNFA 4L3ZA 4DOYA 2E81A 2R0NA 4M9AA 2IX6A 1UKWA 4N5FA 4Q17A 2YYKA 4ZXVA 4RM7A 2RDZA 3SWOA 4U83A 2J7AA 1IVHA 2UXWA 3SF6A 1UDYA 3D9FA 3FO3A 2JBSA 2ZAFA 2DVLA 2JBRA 2WBIA 4L38A 3D9EA 4JEKA 2REHA 3MDEA 1FS8A 1IS2A 3GNCA 1OAHA 2RFQA 5K3GA 2A1TA 5K3HA 3MDDA 2EBAA 4Q5BA 2E80A 3MPIA 3TTBA 4G5EA 3P4TA 2DDHA 3OWAA 3EONA 4IV6A 4X28C 4Q0TA 3D9GA 1WS9A 2VIGA 1FS9A 1BUCA 4Q5CA 1EGDA 4IRNA 2C12A 3BNHA 3D6BA 3II9A 1FS7A 3D1IA 5K3JA 4Q4UA 3L1TA 3RKHA 3F29A 1RX0A 4XVXA 2PG0A 2ZO5A 4X28A 3MMOA 4WJYA 2JBTA 1T9GA 2YYLA 3OIBA 2D29A 1EGCA 3X0XA 3NF4A 3M9VA 3OWMA 1SIQA 3LGQA 3X0YA 3PFDA 4P13A 3AFFA 4ZYJA 3R7KA 1SIRA 3EOMA 1GU6A 3S7WA 3UU9A 4L3XA 2YYIA 4KTOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HR3 A;  1QDB A;  4OO2 A;  1EGE A;  3GQT A;  1R2J A;  4L3Y A;  3SXQ A;  3B96 A;  2Z1Q A;  3AFE A;  3GM6 A;  2FON A;  2YYM A;  3SCE A;  4O5M A;  3LG1 A;  3TOR A;  3BNJ A;  3FCJ A;  3MKH A;  2VR0 A;  2CX9 A;  2YYJ A;  1JQI A;  3D9D A;  2IX5 A;  4KCF A;  2OR0 A;  2OT4 A;  2JIF A;  1W07 A;  3BNG A;  4L1F A;  3MPJ A;  2RF7 A;  3HWC A;  2R0M A;  5K3I A;  2YYG A;  2C0U A;  4Q1O A;  4NXL A;  3MXL A;  3UBR A;  1U8V A;  4W9U A;  3BNF A;  4L3Z A;  4DOY A;  2E81 A;  2R0N A;  4M9A A;  2IX6 A;  1UKW A;  4N5F A;  4Q17 A;  2YYK A;  4ZXV A;  4RM7 A;  2RDZ A;  3SWO A;  4U83 A;  2J7A A;  1IVH A;  2UXW A;  3SF6 A;  1UDY A;  3D9F A;  3FO3 A;  2JBS A;  2ZAF A;  2DVL A;  2JBR A;  2WBI A;  4L38 A;  3D9E A;  4JEK A;  2REH A;  3MDE A;  1FS8 A;  1IS2 A;  3GNC A;  1OAH A;  2RFQ A;  5K3G A;  2A1T A;  5K3H A;  3MDD A;  2EBA A;  4Q5B A;  2E80 A;  3MPI A;  3TTB A;  4G5E A;  3P4T A;  2DDH A;  3OWA A;  3EON A;  4IV6 A;  4X28 C;  4Q0T A;  3D9G A;  1WS9 A;  2VIG A;  1FS9 A;  1BUC A;  4Q5C A;  1EGD A;  4IRN A;  2C12 A;  3BNH A;  3D6B A;  3II9 A;  1FS7 A;  3D1I A;  5K3J A;  4Q4U A;  3L1T A;  3RKH A;  3F29 A;  1RX0 A;  4XVX A;  2PG0 A;  2ZO5 A;  4X28 A;  3MMO A;  4WJY A;  2JBT A;  1T9G A;  2YYL A;  3OIB A;  2D29 A;  1EGC A;  3X0X A;  3NF4 A;  3M9V A;  3OWM A;  1SIQ A;  3LGQ A;  3X0Y A;  3PFD A;  4P13 A;  3AFF A;  4ZYJ A;  3R7K A;  1SIR A;  3EOM A;  1GU6 A;  3S7W A;  3UU9 A;  4L3X A;  2YYI A;  4KTO A; 
#chains in the Genus database with same CATH topology
 4HR3 A;  1QDB A;  1X90 A;  4H7Q A;  4AI6 A;  3C46 A;  4FF2 A;  2BU7 A;  4OO2 A;  1EGE A;  3GQT A;  1PI1 A;  1R2J A;  4L3Y A;  3SXQ A;  3B96 A;  2Z1Q A;  3AFE A;  1GJV A;  1GKZ A;  2OEV A;  2FON A;  2QR4 A;  2XS1 A;  2YYM A;  3GM6 A;  4AKI A;  3TZ2 A;  2Q8F A;  3SCE A;  4O5M A;  3LG1 A;  3TOR A;  3BNJ A;  3FCJ A;  2AZE A;  4FZ4 A;  3MKH A;  2EBF X;  1XFW A;  2VR0 A;  2CX9 A;  2YYJ A;  4L3X A;  4MPE A;  1JQI A;  1JM6 A;  2ZKJ A;  3D9D A;  2IX5 A;  4KCF A;  2OR0 A;  4MP7 A;  2OT4 A;  2JIF A;  4P79 A;  1W07 A;  2Q8I A;  1K93 A;  2BTZ A;  3BNG A;  4L1F A;  3MPJ A;  2RF7 A;  2XS8 A;  3HWC A;  2R0M A;  5K3I A;  2YYG A;  1Y0V A;  4J1V A;  2C0U A;  2HJN A;  4HKR A;  4LQS B;  4LQQ B;  4MPN A;  4Q1O A;  4NXL A;  5M4P A;  1X8Z A;  2Q8H A;  3MXL A;  1RP3 A;  2YGW A;  5B5V A;  3UBR A;  1U8V A;  3DJL A;  4W9U A;  3BNF A;  3C2P A;  4L3Z A;  4DOY A;  5M4K A;  2E81 A;  2R0N A;  4M9A A;  1SC5 A;  5BRM A;  2IX6 A;  3VKH A;  4KSA A;  1K8T A;  1UKW A;  4N5F A;  2R05 A;  3VKG A;  2LFW A;  4Q17 A;  2YYK A;  4ZXV A;  4RM7 A;  2RDZ A;  3SWO A;  3CRL A;  2AO2 A;  3TZ0 A;  4U83 A;  2J7A A;  1IVH A;  2UXW A;  3SF6 A;  4MP2 A;  1UDY A;  3D9F A;  3FO3 A;  3Q23 A;  2OEX A;  1S26 A;  2JBS A;  2ZAF A;  4V25 A;  2DVL A;  2XQR B;  2JBR A;  4JIO A;  1XFX A;  2R03 A;  4E01 A;  2WBI A;  1K90 A;  2FP1 A;  4L38 A;  5B5W A;  4AKH A;  3D9E A;  1XFU A;  4QIC A;  4FF3 A;  4JEK A;  2REH A;  3MDE A;  1FS8 A;  1IS2 A;  3GNC A;  1OAH A;  2RFQ A;  2CJ5 A;  4E00 A;  5B6B A;  5K3G A;  3CRK A;  1X91 A;  2A1T A;  5K3H A;  3MDD A;  5J71 A;  2EBA A;  4Q5B A;  2E80 A;  1XFZ A;  3Q22 A;  4V26 A;  3MPI A;  3TTB A;  1XFV A;  3X29 A;  4KSF A;  4G5E A;  3P4T A;  2DDH A;  2OJQ A;  3C3L A;  3U33 A;  3OWA A;  5J6A A;  3EON A;  4IV6 A;  4X28 C;  1LVC A;  1XG2 B;  4Q0T A;  4E02 A;  3D9G A;  2CJ8 A;  4H81 A;  1WS9 A;  2VIG A;  1FS9 A;  2CJ4 A;  3D2R A;  1Y8P A;  4KS9 A;  1BUC A;  1RJ1 A;  4G97 A;  4Q5C A;  1EGD A;  4IRN A;  2C12 A;  3BNH A;  1SK6 A;  3D6B A;  3II9 A;  1FS7 A;  2BU5 A;  3D1I A;  5K3J A;  4DZY A;  2BU8 A;  3L1T A;  4Q4U A;  3F29 A;  1RX0 A;  3RKH A;  4XVX A;  3TZ5 A;  2PG0 A;  2ZO5 A;  2FP2 A;  4X28 A;  4HKS A;  3MMO A;  2PNR A;  4WJY A;  2BU2 A;  4H85 A;  2JBT A;  1T9G A;  3Q0A A;  2YYL A;  3OIB A;  1R3B A;  5EZ3 A;  2BU6 A;  4FF1 A;  2D29 A;  2EBH X;  3TZ4 A;  5BRK A;  4AKG A;  5M4N A;  2R02 A;  2GBB A;  2EC5 A;  3CE2 A;  1EGC A;  3X0X A;  3NF4 A;  3M9V A;  2CJ6 A;  3OWM A;  4MPC A;  1SIQ A;  3LGQ A;  4F0X A;  1XFY A;  1Y8N A;  2E0A A;  3X0Y A;  2Q8G A;  2PO4 A;  5M4M A;  4JIZ A;  3PFD A;  2CJ7 A;  2F6L A;  1PK0 A;  3KML A;  4P13 A;  3AFF A;  4ZYJ A;  3VAD A;  2ZDX A;  3R7K A;  3N0R A;  5GJW E;  2VF1 A;  1RJ4 A;  1SIR A;  3EOM A;  1Y8O A;  2ZDY A;  1GU6 A;  3S7W A;  3UU9 A;  4FF4 A;  3Q24 A;  1GKX A;  2YYI A;  5GJV E;  4KTO A; 
#chains in the Genus database with same CATH homology
 4HR3 A;  1QDB A;  4OO2 A;  1EGE A;  3GQT A;  1R2J A;  4L3Y A;  3SXQ A;  3B96 A;  2Z1Q A;  3AFE A;  3GM6 A;  2FON A;  2YYM A;  3SCE A;  4O5M A;  3LG1 A;  3TOR A;  3BNJ A;  3FCJ A;  3MKH A;  2VR0 A;  2CX9 A;  2YYJ A;  1JQI A;  3D9D A;  2IX5 A;  4KCF A;  2OR0 A;  2OT4 A;  2JIF A;  1W07 A;  3BNG A;  4L1F A;  3MPJ A;  2RF7 A;  3HWC A;  2R0M A;  5K3I A;  2YYG A;  2C0U A;  4Q1O A;  4NXL A;  3MXL A;  3UBR A;  1U8V A;  4W9U A;  3BNF A;  4L3Z A;  4DOY A;  2E81 A;  2R0N A;  4M9A A;  2IX6 A;  1UKW A;  4N5F A;  4Q17 A;  2YYK A;  4ZXV A;  4RM7 A;  2RDZ A;  3SWO A;  4U83 A;  2J7A A;  1IVH A;  2UXW A;  3SF6 A;  1UDY A;  3D9F A;  3FO3 A;  2JBS A;  2ZAF A;  2DVL A;  2JBR A;  2WBI A;  4L38 A;  3D9E A;  4JEK A;  2REH A;  3MDE A;  1FS8 A;  1IS2 A;  3GNC A;  1OAH A;  2RFQ A;  5K3G A;  2A1T A;  5K3H A;  3MDD A;  2EBA A;  4Q5B A;  2E80 A;  3MPI A;  3TTB A;  4G5E A;  3P4T A;  2DDH A;  3OWA A;  3EON A;  4IV6 A;  4X28 C;  4Q0T A;  3D9G A;  1WS9 A;  2VIG A;  1FS9 A;  1BUC A;  4Q5C A;  1EGD A;  4IRN A;  2C12 A;  3BNH A;  3D6B A;  3II9 A;  1FS7 A;  3D1I A;  5K3J A;  4Q4U A;  3L1T A;  3RKH A;  3F29 A;  1RX0 A;  4XVX A;  2PG0 A;  2ZO5 A;  4X28 A;  3MMO A;  4WJY A;  2JBT A;  1T9G A;  2YYL A;  3OIB A;  2D29 A;  1EGC A;  3X0X A;  3NF4 A;  3M9V A;  3OWM A;  1SIQ A;  3LGQ A;  3X0Y A;  3PFD A;  4P13 A;  3AFF A;  4ZYJ A;  3R7K A;  1SIR A;  3EOM A;  1GU6 A;  3S7W A;  3UU9 A;  4L3X A;  2YYI A;  4KTO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...