5K3IA

Crystal structure of acyl-coa oxidase-1 in caenorhabditis elegans complexed with fad and atp
Total Genus 271
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
271
sequence length
668
structure length
661
Chain Sequence
VHLNKTIQEGDNPDLTAERLTATFDTHAMAAQIYGGEMRARRRREITAKLAEIPELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTDAGELYHLNNEVLGIEGNPMALHGVMFIPALNAQASDEQQAKWLIRALRREIIGTYAQTEMGHGTNLQNLETTATYDIGTQEFVLHTPKITALKWWPGNLGKSSNYAVVVAHMYIKGKNFGPHTFMVPLRDEKTHKPLPGITIGDIGPKMAYNIVDNGFLGFNNYRIPRTNLLMRHTKVEADGTYIKPPAMVHVRSYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYAFQFAGAETVKLYERVLKEMKSGNVSLMADLHALTSGLKSVVTHQTGEGIEQARMACGGHGYSMASYISEIYGVAIGGCTYAGENMVMLLQLARYLVKSAALVKSGKASQLGPLVAYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSLLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLNKTDVLPSVDTYLKPMMEKA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Acyl-coenzyme A oxidase
publication title Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans.
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 271
structure length 661
sequence length 668
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2016-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 5k3iA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3iA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3iA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 5k3iA02
3SXQA 4X28C 3FCJA 3SF6A 4XVXA 2D29A 3AFFA 3MKHA 2CX9A 4G5EA 2PG0A 3F29A 4Q4UA 4DOYA 2ZO5A 2C0UA 3UBRA 2C12A 1FS8A 2REHA 2DDHA 2OR0A 2EBAA 3AFEA 1U8VA 1RX0A 2WBIA 2J7AA 2R0MA 2JBSA 2JIFA 1WS9A 4JEKA 2RDZA 3GM6A 1UDYA 1SIRA 2VIGA 3UU9A 3MDDA 5K3HA 4KCFA 4RM7A 4HR3A 4Q5BA 1T9GA 3S7WA 3BNJA 4O5MA 1W07A 3B96A 4KTOA 3TTBA 1IS2A 4IRNA 2JBRA 2YYGA 1SIQA 3RKHA 2A1TA 2JBTA 2YYIA 2YYKA 1FS9A 4L38A 1FS7A 4Q1OA 3D6BA 4N5FA 2OT4A 2FONA 1GU6A 3BNHA 5K3GA 3M9VA 2IX5A 3SCEA 4OO2A 1UKWA 2ZAFA 3L1TA 1JQIA 1EGEA 4ZYJA 4IV6A 4Q0TA 3NF4A 2YYMA 4W9UA 3OWMA 4L3YA 3LG1A 2RF7A 2E81A 3OWAA 2E80A 2DVLA 3PFDA 4P13A 4L1FA 4ZXVA 3D1IA 3EOMA 5K3JA 3BNGA 1R2JA 2R0NA 3GNCA 1QDBA 3FO3A 4L3XA 3D9GA 2RFQA 2IX6A 4M9AA 2VR0A 4L3ZA 2UXWA 3X0XA 4U83A 5K3IA 3TORA 1EGDA 3II9A 2YYJA 2YYLA 3SWOA 3LGQA 3OIBA 4NXLA 3R7KA 3GQTA 1EGCA 3MPJA 3P4TA 3MPIA 1OAHA 1BUCA 3EONA 3MDEA 3D9EA 4Q5CA 3HWCA 3D9DA 4WJYA 4Q17A 2Z1QA 1IVHA 3X0YA 3MXLA 3D9FA 3BNFA 3MMOA 4X28A
chains in the Genus database with same CATH superfamily
3SXQA 4X28C 3FCJA 4FF2A 4J1VA 3SF6A 4XVXA 4MP2A 2D29A 1S26A 3N0RA 4H7QA 2QR4A 3AFFA 3MKHA 4V26A 3VKGA 4QICA 2CJ6A 2CX9A 3TZ4A 5M4MA 4G5EA 2PG0A 1X8ZA 4F0XA 3F29A 4Q4UA 4DOYA 2ZO5A 2FP1A 2C0UA 3UBRA 2C12A 1FS8A 2REHA 2DDHA 1K90A 2R05A 2CJ7A 1XFXA 2OR0A 2EBAA 3AFEA 1U8VA 1RX0A 2WBIA 2CJ5A 2OJQA 4KSAA 2Q8FA 1K93A 2J7AA 2Q8IA 3Q22A 2R0MA 2JBSA 1XFUA 4MPCA 4AI6A 2JIFA 5B5VA 1GKXA 1WS9A 4JEKA 2RDZA 3GM6A 1UDYA 1SIRA 2VIGA 2BU7A 5EZ3A 3UU9A 3MDDA 5K3HA 4KCFA 2Q8HA 4RM7A 4HR3A 4Q5BA 3C46A 1T9GA 4JIOA 4FF3A 3S7WA 3BNJA 4HKSA 1Y8NA 5BRKA 4O5MA 1W07A 3B96A 1JM6A 1SC5A 2HJNA 1SK6A 4KTOA 2F6LA 1XFWA 1IS2A 3TTBA 2XS8A 4IRNA 2OEVA 1RJ1A 4MP7A 5J6AA 2JBRA 1GJVA 2YYGA 5M4KA 3D2RA 2EBFX 3C2PA 4MPEA 1PK0A 1SIQA 2LFWA 3KMLA 3RKHA 2A1TA 4FZ4A 2JBTA 3VKHA 2YYIA 1K8TA 2YYKA 1FS9A 4L38A 4E01A 4AKHA 3TZ0A 1FS7A 4Q1OA 2EBHX 3U33A 1Y0VA 2BU8A 4LQQB 4DZYA 5B6BA 4AKGA 2BU6A 3D6BA 4N5FA 4JIZA 2OT4A 2FONA 1GU6A 1XFZA 3BNHA 5K3GA 3CRKA 3M9VA 2IX5A 3SCEA 3TZ5A 4OO2A 3DJLA 2BU2A 3VADA 4H85A 1UKWA 2ZAFA 4E00A 3TZ2A 3L1TA 1JQIA 3CE2A 1EGEA 2AO2A 4ZYJA 1Y8PA 4IV6A 5BRMA 4Q0TA 1X90A 3CRLA 3NF4A 2BTZA 2YYMA 4W9UA 3OWMA 4L3YA 3LG1A 1XG2B 2RF7A 2E81A 2XS1A 4FF4A 3OWAA 2E80A 4LQSB 4P79A 2DVLA 3PFDA 4KS9A 4P13A 4G97A 4FF1A 4L1FA 4HKRA 4ZXVA 4E02A 3D1IA 3Q23A 2GBBA 1X91A 2CJ8A 3EOMA 5K3JA 2XQRB 5M4PA 3BNGA 1R3BA 2PNRA 1R2JA 2R0NA 3GNCA 1QDBA 3FO3A 4KSFA 3X29A 5J71A 4L3XA 3Q0AA 3D9GA 2RFQA 2IX6A 4M9AA 1XFYA 2FP2A 2VR0A 2UXWA 3X0XA 4U83A 4L3ZA 4MPNA 2AZEA 1LVCA 2BU5A 5K3IA 3TORA 1EGDA 5B5WA 3II9A 2YYJA 2YYLA 4AKIA 2PO4A 2CJ4A 3SWOA 2EC5A 2OEXA 3LGQA 3OIBA 4NXLA 2ZDYA 3R7KA 3Q24A 3GQTA 1GKZA 1EGCA 3MPJA 3P4TA 4H81A 3MPIA 1OAHA 5M4NA 1BUCA 3EONA 1RJ4A 3MDEA 3D9EA 2ZKJA 4Q5CA 2Q8GA 1RP3A 3HWCA 3D9DA 1PI1A 1Y8OA 2E0AA 4Q17A 2Z1QA 2R02A 1IVHA 3X0YA 4WJYA 2VF1A 5GJWE 3MXLA 1XFVA 3D9FA 2R03A 5GJVE 2ZDXA 3BNFA 2YGWA 3MMOA 4V25A 4X28A 3C3LA
chains in the Genus database with same CATH topology
3SXQA 4X28C 3FCJA 3SF6A 4XVXA 2D29A 3AFFA 3MKHA 2CX9A 4G5EA 2PG0A 3F29A 4Q4UA 4DOYA 2ZO5A 2C0UA 3UBRA 2C12A 1FS8A 2REHA 2DDHA 2OR0A 2EBAA 3AFEA 1U8VA 1RX0A 2WBIA 2J7AA 2R0MA 2JBSA 2JIFA 1WS9A 4JEKA 2RDZA 3GM6A 1UDYA 1SIRA 2VIGA 3UU9A 3MDDA 5K3HA 4KCFA 4RM7A 4HR3A 4Q5BA 1T9GA 3S7WA 3BNJA 4O5MA 1W07A 3B96A 4KTOA 3TTBA 1IS2A 4IRNA 2JBRA 2YYGA 1SIQA 3RKHA 2A1TA 2JBTA 2YYIA 2YYKA 1FS9A 4L38A 1FS7A 4Q1OA 3D6BA 4N5FA 2OT4A 2FONA 1GU6A 3BNHA 5K3GA 3M9VA 2IX5A 3SCEA 4OO2A 1UKWA 2ZAFA 3L1TA 1JQIA 1EGEA 4ZYJA 4IV6A 4Q0TA 3NF4A 2YYMA 4W9UA 3OWMA 4L3YA 3LG1A 2RF7A 2E81A 3OWAA 2E80A 2DVLA 3PFDA 4P13A 4L1FA 4ZXVA 3D1IA 3EOMA 5K3JA 3BNGA 1R2JA 2R0NA 3GNCA 1QDBA 3FO3A 4L3XA 3D9GA 2RFQA 2IX6A 4M9AA 2VR0A 4L3ZA 2UXWA 3X0XA 4U83A 5K3IA 3TORA 1EGDA 3II9A 2YYJA 2YYLA 3SWOA 3LGQA 3OIBA 4NXLA 3R7KA 3GQTA 1EGCA 3MPJA 3P4TA 3MPIA 1OAHA 1BUCA 3EONA 3MDEA 3D9EA 4Q5CA 3HWCA 3D9DA 4WJYA 4Q17A 2Z1QA 1IVHA 3X0YA 3MXLA 3D9FA 3BNFA 3MMOA 4X28A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SXQ A;  4X28 C;  3FCJ A;  3SF6 A;  4XVX A;  2D29 A;  3AFF A;  3MKH A;  2CX9 A;  4G5E A;  2PG0 A;  3F29 A;  4Q4U A;  4DOY A;  2ZO5 A;  2C0U A;  3UBR A;  2C12 A;  1FS8 A;  2REH A;  2DDH A;  2OR0 A;  2EBA A;  3AFE A;  1U8V A;  1RX0 A;  2WBI A;  2J7A A;  2R0M A;  2JBS A;  2JIF A;  1WS9 A;  4JEK A;  2RDZ A;  3GM6 A;  1UDY A;  1SIR A;  2VIG A;  3UU9 A;  3MDD A;  5K3H A;  4KCF A;  4RM7 A;  4HR3 A;  4Q5B A;  1T9G A;  3S7W A;  3BNJ A;  4O5M A;  1W07 A;  3B96 A;  4KTO A;  3TTB A;  1IS2 A;  4IRN A;  2JBR A;  2YYG A;  1SIQ A;  3RKH A;  2A1T A;  2JBT A;  2YYI A;  2YYK A;  1FS9 A;  4L38 A;  1FS7 A;  4Q1O A;  3D6B A;  4N5F A;  2OT4 A;  2FON A;  1GU6 A;  3BNH A;  5K3G A;  3M9V A;  2IX5 A;  3SCE A;  4OO2 A;  1UKW A;  2ZAF A;  3L1T A;  1JQI A;  1EGE A;  4ZYJ A;  4IV6 A;  4Q0T A;  3NF4 A;  2YYM A;  4W9U A;  3OWM A;  4L3Y A;  3LG1 A;  2RF7 A;  2E81 A;  3OWA A;  2E80 A;  2DVL A;  3PFD A;  4P13 A;  4L1F A;  4ZXV A;  3D1I A;  3EOM A;  5K3J A;  3BNG A;  1R2J A;  2R0N A;  3GNC A;  1QDB A;  3FO3 A;  4L3X A;  3D9G A;  2RFQ A;  2IX6 A;  4M9A A;  2VR0 A;  4L3Z A;  2UXW A;  3X0X A;  4U83 A;  5K3I A;  3TOR A;  1EGD A;  3II9 A;  2YYJ A;  2YYL A;  3SWO A;  3LGQ A;  3OIB A;  4NXL A;  3R7K A;  3GQT A;  1EGC A;  3MPJ A;  3P4T A;  3MPI A;  1OAH A;  1BUC A;  3EON A;  3MDE A;  3D9E A;  4Q5C A;  3HWC A;  3D9D A;  4WJY A;  4Q17 A;  2Z1Q A;  1IVH A;  3X0Y A;  3MXL A;  3D9F A;  3BNF A;  3MMO A;  4X28 A; 
#chains in the Genus database with same CATH topology
 3SXQ A;  4X28 C;  3FCJ A;  4FF2 A;  4J1V A;  3SF6 A;  4XVX A;  4MP2 A;  2D29 A;  1S26 A;  3N0R A;  4H7Q A;  2QR4 A;  3AFF A;  3MKH A;  4V26 A;  3VKG A;  4QIC A;  2CJ6 A;  2CX9 A;  3TZ4 A;  5M4M A;  4G5E A;  2PG0 A;  1X8Z A;  4F0X A;  3F29 A;  4Q4U A;  4DOY A;  2ZO5 A;  2FP1 A;  2C0U A;  3UBR A;  2C12 A;  1FS8 A;  2REH A;  2DDH A;  1K90 A;  2R05 A;  2CJ7 A;  1XFX A;  2OR0 A;  2EBA A;  3AFE A;  1U8V A;  1RX0 A;  2WBI A;  2CJ5 A;  2OJQ A;  4KSA A;  2Q8F A;  1K93 A;  2J7A A;  2Q8I A;  3Q22 A;  2R0M A;  2JBS A;  1XFU A;  4MPC A;  4AI6 A;  2JIF A;  5B5V A;  1GKX A;  1WS9 A;  4JEK A;  2RDZ A;  3GM6 A;  1UDY A;  1SIR A;  2VIG A;  2BU7 A;  5EZ3 A;  3UU9 A;  3MDD A;  5K3H A;  4KCF A;  2Q8H A;  4RM7 A;  4HR3 A;  4Q5B A;  3C46 A;  1T9G A;  4JIO A;  4FF3 A;  3S7W A;  3BNJ A;  4HKS A;  1Y8N A;  5BRK A;  4O5M A;  1W07 A;  3B96 A;  1JM6 A;  1SC5 A;  2HJN A;  1SK6 A;  4KTO A;  2F6L A;  1XFW A;  1IS2 A;  3TTB A;  2XS8 A;  4IRN A;  2OEV A;  1RJ1 A;  4MP7 A;  5J6A A;  2JBR A;  1GJV A;  2YYG A;  5M4K A;  3D2R A;  2EBF X;  3C2P A;  4MPE A;  1PK0 A;  1SIQ A;  2LFW A;  3KML A;  3RKH A;  2A1T A;  4FZ4 A;  2JBT A;  3VKH A;  2YYI A;  1K8T A;  2YYK A;  1FS9 A;  4L38 A;  4E01 A;  4AKH A;  3TZ0 A;  1FS7 A;  4Q1O A;  2EBH X;  3U33 A;  1Y0V A;  2BU8 A;  4LQQ B;  4DZY A;  5B6B A;  4AKG A;  2BU6 A;  3D6B A;  4N5F A;  4JIZ A;  2OT4 A;  2FON A;  1GU6 A;  1XFZ A;  3BNH A;  5K3G A;  3CRK A;  3M9V A;  2IX5 A;  3SCE A;  3TZ5 A;  4OO2 A;  3DJL A;  2BU2 A;  3VAD A;  4H85 A;  1UKW A;  2ZAF A;  4E00 A;  3TZ2 A;  3L1T A;  1JQI A;  3CE2 A;  1EGE A;  2AO2 A;  4ZYJ A;  1Y8P A;  4IV6 A;  5BRM A;  4Q0T A;  1X90 A;  3CRL A;  3NF4 A;  2BTZ A;  2YYM A;  4W9U A;  3OWM A;  4L3Y A;  3LG1 A;  1XG2 B;  2RF7 A;  2E81 A;  2XS1 A;  4FF4 A;  3OWA A;  2E80 A;  4LQS B;  4P79 A;  2DVL A;  3PFD A;  4KS9 A;  4P13 A;  4G97 A;  4FF1 A;  4L1F A;  4HKR A;  4ZXV A;  4E02 A;  3D1I A;  3Q23 A;  2GBB A;  1X91 A;  2CJ8 A;  3EOM A;  5K3J A;  2XQR B;  5M4P A;  3BNG A;  1R3B A;  2PNR A;  1R2J A;  2R0N A;  3GNC A;  1QDB A;  3FO3 A;  4KSF A;  3X29 A;  5J71 A;  4L3X A;  3Q0A A;  3D9G A;  2RFQ A;  2IX6 A;  4M9A A;  1XFY A;  2FP2 A;  2VR0 A;  2UXW A;  3X0X A;  4U83 A;  4L3Z A;  4MPN A;  2AZE A;  1LVC A;  2BU5 A;  5K3I A;  3TOR A;  1EGD A;  5B5W A;  3II9 A;  2YYJ A;  2YYL A;  4AKI A;  2PO4 A;  2CJ4 A;  3SWO A;  2EC5 A;  2OEX A;  3LGQ A;  3OIB A;  4NXL A;  2ZDY A;  3R7K A;  3Q24 A;  3GQT A;  1GKZ A;  1EGC A;  3MPJ A;  3P4T A;  4H81 A;  3MPI A;  1OAH A;  5M4N A;  1BUC A;  3EON A;  1RJ4 A;  3MDE A;  3D9E A;  2ZKJ A;  4Q5C A;  2Q8G A;  1RP3 A;  3HWC A;  3D9D A;  1PI1 A;  1Y8O A;  2E0A A;  4Q17 A;  2Z1Q A;  2R02 A;  1IVH A;  3X0Y A;  4WJY A;  2VF1 A;  5GJW E;  3MXL A;  1XFV A;  3D9F A;  2R03 A;  5GJV E;  2ZDX A;  3BNF A;  2YGW A;  3MMO A;  4V25 A;  4X28 A;  3C3L A; 
#chains in the Genus database with same CATH homology
 3SXQ A;  4X28 C;  3FCJ A;  3SF6 A;  4XVX A;  2D29 A;  3AFF A;  3MKH A;  2CX9 A;  4G5E A;  2PG0 A;  3F29 A;  4Q4U A;  4DOY A;  2ZO5 A;  2C0U A;  3UBR A;  2C12 A;  1FS8 A;  2REH A;  2DDH A;  2OR0 A;  2EBA A;  3AFE A;  1U8V A;  1RX0 A;  2WBI A;  2J7A A;  2R0M A;  2JBS A;  2JIF A;  1WS9 A;  4JEK A;  2RDZ A;  3GM6 A;  1UDY A;  1SIR A;  2VIG A;  3UU9 A;  3MDD A;  5K3H A;  4KCF A;  4RM7 A;  4HR3 A;  4Q5B A;  1T9G A;  3S7W A;  3BNJ A;  4O5M A;  1W07 A;  3B96 A;  4KTO A;  3TTB A;  1IS2 A;  4IRN A;  2JBR A;  2YYG A;  1SIQ A;  3RKH A;  2A1T A;  2JBT A;  2YYI A;  2YYK A;  1FS9 A;  4L38 A;  1FS7 A;  4Q1O A;  3D6B A;  4N5F A;  2OT4 A;  2FON A;  1GU6 A;  3BNH A;  5K3G A;  3M9V A;  2IX5 A;  3SCE A;  4OO2 A;  1UKW A;  2ZAF A;  3L1T A;  1JQI A;  1EGE A;  4ZYJ A;  4IV6 A;  4Q0T A;  3NF4 A;  2YYM A;  4W9U A;  3OWM A;  4L3Y A;  3LG1 A;  2RF7 A;  2E81 A;  3OWA A;  2E80 A;  2DVL A;  3PFD A;  4P13 A;  4L1F A;  4ZXV A;  3D1I A;  3EOM A;  5K3J A;  3BNG A;  1R2J A;  2R0N A;  3GNC A;  1QDB A;  3FO3 A;  4L3X A;  3D9G A;  2RFQ A;  2IX6 A;  4M9A A;  2VR0 A;  4L3Z A;  2UXW A;  3X0X A;  4U83 A;  5K3I A;  3TOR A;  1EGD A;  3II9 A;  2YYJ A;  2YYL A;  3SWO A;  3LGQ A;  3OIB A;  4NXL A;  3R7K A;  3GQT A;  1EGC A;  3MPJ A;  3P4T A;  3MPI A;  1OAH A;  1BUC A;  3EON A;  3MDE A;  3D9E A;  4Q5C A;  3HWC A;  3D9D A;  4WJY A;  4Q17 A;  2Z1Q A;  1IVH A;  3X0Y A;  3MXL A;  3D9F A;  3BNF A;  3MMO A;  4X28 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...