5K3IA

Crystal structure of acyl-coa oxidase-1 in caenorhabditis elegans complexed with fad and atp
Total Genus 271
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
271
sequence length
668
structure length
661
Chain Sequence
VHLNKTIQEGDNPDLTAERLTATFDTHAMAAQIYGGEMRARRRREITAKLAEIPELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTDAGELYHLNNEVLGIEGNPMALHGVMFIPALNAQASDEQQAKWLIRALRREIIGTYAQTEMGHGTNLQNLETTATYDIGTQEFVLHTPKITALKWWPGNLGKSSNYAVVVAHMYIKGKNFGPHTFMVPLRDEKTHKPLPGITIGDIGPKMAYNIVDNGFLGFNNYRIPRTNLLMRHTKVEADGTYIKPPAMVHVRSYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYAFQFAGAETVKLYERVLKEMKSGNVSLMADLHALTSGLKSVVTHQTGEGIEQARMACGGHGYSMASYISEIYGVAIGGCTYAGENMVMLLQLARYLVKSAALVKSGKASQLGPLVAYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSLLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLNKTDVLPSVDTYLKPMMEKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans.
pubmed doi rcsb
source organism Caenorhabditis elegans
molecule tags Oxidoreductase
molecule keywords Acyl-coenzyme A oxidase
total genus 271
structure length 661
sequence length 668
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2016-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 5k3iA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3iA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3iA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 5k3iA02
3LG1A 1UKWA 4U83A 2REHA 1EGEA 4RM7A 4L38A 4L3ZA 3TORA 3PFDA 2VIGA 3L1TA 3MMOA 2YYMA 2RDZA 1SIRA 2FONA 4OO2A 2R0MA 1QDBA 3S7WA 3MDEA 3BNGA 1IVHA 3EOMA 2VR0A 3BNJA 4KTOA 3MPIA 4P13A 1FS8A 2ZAFA 2R0NA 1W07A 3TTBA 5K3GA 3LGQA 2C0UA 3D9FA 3FO3A 4O5MA 3D1IA 1RX0A 4ZYJA 2A1TA 2JBRA 3SF6A 4NXLA 4Q1OA 2YYJA 2OT4A 3NF4A 3F29A 2E81A 2RF7A 3GM6A 3UU9A 2PG0A 2IX6A 3MDDA 4IRNA 5K3IA 4M9AA 4XVXA 3OWMA 3BNFA 3SXQA 3OWAA 3FCJA 3R7KA 4W9UA 3AFFA 2YYGA 3D6BA 3BNHA 2YYKA 3MKHA 1EGDA 1JQIA 4X28A 3P4TA 1R2JA 4L3XA 4Q4UA 2C12A 3D9GA 4WJYA 3D9DA 3UBRA 5K3JA 1FS9A 3SWOA 2YYIA 3GQTA 3X0XA 2E80A 4HR3A 4Q5CA 4Q5BA 3GNCA 4G5EA 2JBTA 2Z1QA 3MPJA 4L1FA 4ZXVA 3AFEA 5K3HA 2J7AA 2UXWA 4DOYA 1GU6A 2IX5A 4L3YA 1IS2A 1FS7A 1T9GA 2ZO5A 1BUCA 2DDHA 2JBSA 2EBAA 1U8VA 1SIQA 4Q17A 3RKHA 3B96A 4N5FA 2JIFA 2RFQA 3M9VA 3OIBA 4JEKA 1WS9A 3X0YA 1EGCA 2DVLA 3II9A 3MXLA 2YYLA 4Q0TA 1OAHA 2D29A 4KCFA 4X28C 2WBIA 2CX9A 3EONA 1UDYA 2OR0A 3HWCA 3SCEA 4IV6A 3D9EA
chains in the Genus database with same CATH superfamily
3LG1A 1UKWA 4U83A 2REHA 2LFWA 1EGEA 4HKRA 4RM7A 4L38A 4L3ZA 2E0AA 3PFDA 2VIGA 2EBHX 3L1TA 4MP2A 3TORA 3MMOA 3D2RA 2YYMA 2AZEA 2GBBA 4P79A 1K93A 1GKZA 2RDZA 3Q24A 4FF4A 3X29A 1SIRA 2FONA 1Y0VA 4OO2A 4FF2A 1R3BA 2R0MA 2BU2A 1QDBA 1X8ZA 2PO4A 4E00A 3S7WA 3MDEA 3BNGA 1IVHA 3EOMA 2CJ8A 2VR0A 3BNJA 4KSFA 4QICA 4KTOA 2HJNA 3MPIA 5M4NA 4P13A 4J1VA 1FS8A 1GKXA 2F6LA 3KMLA 4E01A 2ZAFA 2R0NA 1SK6A 1W07A 2Q8IA 3TTBA 5K3GA 3LGQA 2C0UA 5GJVE 3D9FA 3FO3A 4O5MA 3D1IA 3CE2A 4V25A 1RX0A 1XFWA 4ZYJA 1XFXA 2A1TA 2JBRA 3SF6A 4NXLA 4Q1OA 3TZ2A 2YYJA 2OT4A 3NF4A 3F29A 2E81A 4MPCA 2RF7A 5M4KA 3GM6A 3UU9A 3VKGA 4LQQB 5B6BA 2PG0A 1RJ1A 2IX6A 2FP1A 3MDDA 4IRNA 1XFVA 2Q8GA 1S26A 4KS9A 4AKHA 1LVCA 1JM6A 5M4MA 3VKHA 5K3IA 4M9AA 4XVXA 2EC5A 3OWMA 5B5VA 3Q23A 2BU8A 2CJ5A 4FF3A 4AI6A 3BNFA 3SXQA 1XFZA 5GJWE 5J71A 1K8TA 3OWAA 3FCJA 3R7KA 3TZ0A 3C3LA 4W9UA 3AFFA 2XS1A 4LQSB 2YYGA 3D6BA 3BNHA 2YYKA 2EBFX 3MKHA 2R02A 1EGDA 1JQIA 4X28A 2Q8HA 3P4TA 4MPEA 1R2JA 2ZDXA 4FZ4A 2C12A 4L3XA 3D9GA 4Q4UA 1Y8PA 4WJYA 3D9DA 5BRMA 5K3JA 1X90A 2ZKJA 1FS9A 3SWOA 3UBRA 1PI1A 2YYIA 2XS8A 3GQTA 3X0XA 2E80A 3TZ5A 4HR3A 1GJVA 4E02A 4FF1A 2FP2A 4Q5CA 2AO2A 4Q5BA 3GNCA 4G5EA 4G97A 2ZDYA 1X91A 2JBTA 2Z1QA 3MPJA 4L1FA 4ZXVA 3AFEA 5K3HA 1SC5A 2J7AA 2CJ6A 2UXWA 2XQRB 4DOYA 1GU6A 4HKSA 1RP3A 3VADA 2IX5A 4L3YA 1IS2A 1FS7A 4H85A 1Y8OA 3U33A 4JIOA 2BU6A 1T9GA 2R03A 1XG2B 2R05A 2ZO5A 1BUCA 2OEXA 2DDHA 3CRLA 2JBSA 2EBAA 2BTZA 2OJQA 3N0RA 1U8VA 2CJ4A 4H7QA 2Q8FA 2BU7A 2QR4A 4JIZA 4F0XA 4AKGA 5J6AA 2CJ7A 1SIQA 3C2PA 4Q17A 5EZ3A 1K90A 3DJLA 4MPNA 3RKHA 3Q22A 3B96A 4N5FA 2JIFA 2RFQA 3M9VA 3OIBA 4JEKA 1Y8NA 5BRKA 1WS9A 2YGWA 3X0YA 1EGCA 2DVLA 3II9A 3MXLA 1RJ4A 2OEVA 2YYLA 4Q0TA 3TZ4A 3CRKA 2PNRA 1OAHA 2VF1A 4V26A 4KSAA 4AKIA 2D29A 4KCFA 4X28C 3Q0AA 2WBIA 2CX9A 4H81A 5M4PA 4MP7A 3EONA 5B5WA 1XFYA 3C46A 1UDYA 2OR0A 3HWCA 2BU5A 1PK0A 3SCEA 4IV6A 4DZYA 1XFUA 3D9EA
chains in the Genus database with same CATH topology
3LG1A 1UKWA 4U83A 2REHA 1EGEA 4RM7A 4L38A 4L3ZA 3TORA 3PFDA 2VIGA 3L1TA 3MMOA 2YYMA 2RDZA 1SIRA 2FONA 4OO2A 2R0MA 1QDBA 3S7WA 3MDEA 3BNGA 1IVHA 3EOMA 2VR0A 3BNJA 4KTOA 3MPIA 4P13A 1FS8A 2ZAFA 2R0NA 1W07A 3TTBA 5K3GA 3LGQA 2C0UA 3D9FA 3FO3A 4O5MA 3D1IA 1RX0A 4ZYJA 2A1TA 2JBRA 3SF6A 4NXLA 4Q1OA 2YYJA 2OT4A 3NF4A 3F29A 2E81A 2RF7A 3GM6A 3UU9A 2PG0A 2IX6A 3MDDA 4IRNA 5K3IA 4M9AA 4XVXA 3OWMA 3BNFA 3SXQA 3OWAA 3FCJA 3R7KA 4W9UA 3AFFA 2YYGA 3D6BA 3BNHA 2YYKA 3MKHA 1EGDA 1JQIA 4X28A 3P4TA 1R2JA 4L3XA 4Q4UA 2C12A 3D9GA 4WJYA 3D9DA 3UBRA 5K3JA 1FS9A 3SWOA 2YYIA 3GQTA 3X0XA 2E80A 4HR3A 4Q5CA 4Q5BA 3GNCA 4G5EA 2JBTA 2Z1QA 3MPJA 4L1FA 4ZXVA 3AFEA 5K3HA 2J7AA 2UXWA 4DOYA 1GU6A 2IX5A 4L3YA 1IS2A 1FS7A 1T9GA 2ZO5A 1BUCA 2DDHA 2JBSA 2EBAA 1U8VA 1SIQA 4Q17A 3RKHA 3B96A 4N5FA 2JIFA 2RFQA 3M9VA 3OIBA 4JEKA 1WS9A 3X0YA 1EGCA 2DVLA 3II9A 3MXLA 2YYLA 4Q0TA 1OAHA 2D29A 4KCFA 4X28C 2WBIA 2CX9A 3EONA 1UDYA 2OR0A 3HWCA 3SCEA 4IV6A 3D9EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LG1 A;  1UKW A;  4U83 A;  2REH A;  1EGE A;  4RM7 A;  4L38 A;  4L3Z A;  3TOR A;  3PFD A;  2VIG A;  3L1T A;  3MMO A;  2YYM A;  2RDZ A;  1SIR A;  2FON A;  4OO2 A;  2R0M A;  1QDB A;  3S7W A;  3MDE A;  3BNG A;  1IVH A;  3EOM A;  2VR0 A;  3BNJ A;  4KTO A;  3MPI A;  4P13 A;  1FS8 A;  2ZAF A;  2R0N A;  1W07 A;  3TTB A;  5K3G A;  3LGQ A;  2C0U A;  3D9F A;  3FO3 A;  4O5M A;  3D1I A;  1RX0 A;  4ZYJ A;  2A1T A;  2JBR A;  3SF6 A;  4NXL A;  4Q1O A;  2YYJ A;  2OT4 A;  3NF4 A;  3F29 A;  2E81 A;  2RF7 A;  3GM6 A;  3UU9 A;  2PG0 A;  2IX6 A;  3MDD A;  4IRN A;  5K3I A;  4M9A A;  4XVX A;  3OWM A;  3BNF A;  3SXQ A;  3OWA A;  3FCJ A;  3R7K A;  4W9U A;  3AFF A;  2YYG A;  3D6B A;  3BNH A;  2YYK A;  3MKH A;  1EGD A;  1JQI A;  4X28 A;  3P4T A;  1R2J A;  4L3X A;  4Q4U A;  2C12 A;  3D9G A;  4WJY A;  3D9D A;  3UBR A;  5K3J A;  1FS9 A;  3SWO A;  2YYI A;  3GQT A;  3X0X A;  2E80 A;  4HR3 A;  4Q5C A;  4Q5B A;  3GNC A;  4G5E A;  2JBT A;  2Z1Q A;  3MPJ A;  4L1F A;  4ZXV A;  3AFE A;  5K3H A;  2J7A A;  2UXW A;  4DOY A;  1GU6 A;  2IX5 A;  4L3Y A;  1IS2 A;  1FS7 A;  1T9G A;  2ZO5 A;  1BUC A;  2DDH A;  2JBS A;  2EBA A;  1U8V A;  1SIQ A;  4Q17 A;  3RKH A;  3B96 A;  4N5F A;  2JIF A;  2RFQ A;  3M9V A;  3OIB A;  4JEK A;  1WS9 A;  3X0Y A;  1EGC A;  2DVL A;  3II9 A;  3MXL A;  2YYL A;  4Q0T A;  1OAH A;  2D29 A;  4KCF A;  4X28 C;  2WBI A;  2CX9 A;  3EON A;  1UDY A;  2OR0 A;  3HWC A;  3SCE A;  4IV6 A;  3D9E A; 
#chains in the Genus database with same CATH topology
 3LG1 A;  1UKW A;  4U83 A;  2REH A;  2LFW A;  1EGE A;  4HKR A;  4RM7 A;  4L38 A;  4L3Z A;  2E0A A;  3PFD A;  2VIG A;  2EBH X;  3L1T A;  4MP2 A;  3TOR A;  3MMO A;  3D2R A;  2YYM A;  2AZE A;  2GBB A;  4P79 A;  1K93 A;  1GKZ A;  2RDZ A;  3Q24 A;  4FF4 A;  3X29 A;  1SIR A;  2FON A;  1Y0V A;  4OO2 A;  4FF2 A;  1R3B A;  2R0M A;  2BU2 A;  1QDB A;  1X8Z A;  2PO4 A;  4E00 A;  3S7W A;  3MDE A;  3BNG A;  1IVH A;  3EOM A;  2CJ8 A;  2VR0 A;  3BNJ A;  4KSF A;  4QIC A;  4KTO A;  2HJN A;  3MPI A;  5M4N A;  4P13 A;  4J1V A;  1FS8 A;  1GKX A;  2F6L A;  3KML A;  4E01 A;  2ZAF A;  2R0N A;  1SK6 A;  1W07 A;  2Q8I A;  3TTB A;  5K3G A;  3LGQ A;  2C0U A;  5GJV E;  3D9F A;  3FO3 A;  4O5M A;  3D1I A;  3CE2 A;  4V25 A;  1RX0 A;  1XFW A;  4ZYJ A;  1XFX A;  2A1T A;  2JBR A;  3SF6 A;  4NXL A;  4Q1O A;  3TZ2 A;  2YYJ A;  2OT4 A;  3NF4 A;  3F29 A;  2E81 A;  4MPC A;  2RF7 A;  5M4K A;  3GM6 A;  3UU9 A;  3VKG A;  4LQQ B;  5B6B A;  2PG0 A;  1RJ1 A;  2IX6 A;  2FP1 A;  3MDD A;  4IRN A;  1XFV A;  2Q8G A;  1S26 A;  4KS9 A;  4AKH A;  1LVC A;  1JM6 A;  5M4M A;  3VKH A;  5K3I A;  4M9A A;  4XVX A;  2EC5 A;  3OWM A;  5B5V A;  3Q23 A;  2BU8 A;  2CJ5 A;  4FF3 A;  4AI6 A;  3BNF A;  3SXQ A;  1XFZ A;  5GJW E;  5J71 A;  1K8T A;  3OWA A;  3FCJ A;  3R7K A;  3TZ0 A;  3C3L A;  4W9U A;  3AFF A;  2XS1 A;  4LQS B;  2YYG A;  3D6B A;  3BNH A;  2YYK A;  2EBF X;  3MKH A;  2R02 A;  1EGD A;  1JQI A;  4X28 A;  2Q8H A;  3P4T A;  4MPE A;  1R2J A;  2ZDX A;  4FZ4 A;  2C12 A;  4L3X A;  3D9G A;  4Q4U A;  1Y8P A;  4WJY A;  3D9D A;  5BRM A;  5K3J A;  1X90 A;  2ZKJ A;  1FS9 A;  3SWO A;  3UBR A;  1PI1 A;  2YYI A;  2XS8 A;  3GQT A;  3X0X A;  2E80 A;  3TZ5 A;  4HR3 A;  1GJV A;  4E02 A;  4FF1 A;  2FP2 A;  4Q5C A;  2AO2 A;  4Q5B A;  3GNC A;  4G5E A;  4G97 A;  2ZDY A;  1X91 A;  2JBT A;  2Z1Q A;  3MPJ A;  4L1F A;  4ZXV A;  3AFE A;  5K3H A;  1SC5 A;  2J7A A;  2CJ6 A;  2UXW A;  2XQR B;  4DOY A;  1GU6 A;  4HKS A;  1RP3 A;  3VAD A;  2IX5 A;  4L3Y A;  1IS2 A;  1FS7 A;  4H85 A;  1Y8O A;  3U33 A;  4JIO A;  2BU6 A;  1T9G A;  2R03 A;  1XG2 B;  2R05 A;  2ZO5 A;  1BUC A;  2OEX A;  2DDH A;  3CRL A;  2JBS A;  2EBA A;  2BTZ A;  2OJQ A;  3N0R A;  1U8V A;  2CJ4 A;  4H7Q A;  2Q8F A;  2BU7 A;  2QR4 A;  4JIZ A;  4F0X A;  4AKG A;  5J6A A;  2CJ7 A;  1SIQ A;  3C2P A;  4Q17 A;  5EZ3 A;  1K90 A;  3DJL A;  4MPN A;  3RKH A;  3Q22 A;  3B96 A;  4N5F A;  2JIF A;  2RFQ A;  3M9V A;  3OIB A;  4JEK A;  1Y8N A;  5BRK A;  1WS9 A;  2YGW A;  3X0Y A;  1EGC A;  2DVL A;  3II9 A;  3MXL A;  1RJ4 A;  2OEV A;  2YYL A;  4Q0T A;  3TZ4 A;  3CRK A;  2PNR A;  1OAH A;  2VF1 A;  4V26 A;  4KSA A;  4AKI A;  2D29 A;  4KCF A;  4X28 C;  3Q0A A;  2WBI A;  2CX9 A;  4H81 A;  5M4P A;  4MP7 A;  3EON A;  5B5W A;  1XFY A;  3C46 A;  1UDY A;  2OR0 A;  3HWC A;  2BU5 A;  1PK0 A;  3SCE A;  4IV6 A;  4DZY A;  1XFU A;  3D9E A; 
#chains in the Genus database with same CATH homology
 3LG1 A;  1UKW A;  4U83 A;  2REH A;  1EGE A;  4RM7 A;  4L38 A;  4L3Z A;  3TOR A;  3PFD A;  2VIG A;  3L1T A;  3MMO A;  2YYM A;  2RDZ A;  1SIR A;  2FON A;  4OO2 A;  2R0M A;  1QDB A;  3S7W A;  3MDE A;  3BNG A;  1IVH A;  3EOM A;  2VR0 A;  3BNJ A;  4KTO A;  3MPI A;  4P13 A;  1FS8 A;  2ZAF A;  2R0N A;  1W07 A;  3TTB A;  5K3G A;  3LGQ A;  2C0U A;  3D9F A;  3FO3 A;  4O5M A;  3D1I A;  1RX0 A;  4ZYJ A;  2A1T A;  2JBR A;  3SF6 A;  4NXL A;  4Q1O A;  2YYJ A;  2OT4 A;  3NF4 A;  3F29 A;  2E81 A;  2RF7 A;  3GM6 A;  3UU9 A;  2PG0 A;  2IX6 A;  3MDD A;  4IRN A;  5K3I A;  4M9A A;  4XVX A;  3OWM A;  3BNF A;  3SXQ A;  3OWA A;  3FCJ A;  3R7K A;  4W9U A;  3AFF A;  2YYG A;  3D6B A;  3BNH A;  2YYK A;  3MKH A;  1EGD A;  1JQI A;  4X28 A;  3P4T A;  1R2J A;  4L3X A;  4Q4U A;  2C12 A;  3D9G A;  4WJY A;  3D9D A;  3UBR A;  5K3J A;  1FS9 A;  3SWO A;  2YYI A;  3GQT A;  3X0X A;  2E80 A;  4HR3 A;  4Q5C A;  4Q5B A;  3GNC A;  4G5E A;  2JBT A;  2Z1Q A;  3MPJ A;  4L1F A;  4ZXV A;  3AFE A;  5K3H A;  2J7A A;  2UXW A;  4DOY A;  1GU6 A;  2IX5 A;  4L3Y A;  1IS2 A;  1FS7 A;  1T9G A;  2ZO5 A;  1BUC A;  2DDH A;  2JBS A;  2EBA A;  1U8V A;  1SIQ A;  4Q17 A;  3RKH A;  3B96 A;  4N5F A;  2JIF A;  2RFQ A;  3M9V A;  3OIB A;  4JEK A;  1WS9 A;  3X0Y A;  1EGC A;  2DVL A;  3II9 A;  3MXL A;  2YYL A;  4Q0T A;  1OAH A;  2D29 A;  4KCF A;  4X28 C;  2WBI A;  2CX9 A;  3EON A;  1UDY A;  2OR0 A;  3HWC A;  3SCE A;  4IV6 A;  3D9E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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