5LDRA

Crystal structure of a cold-adapted dimeric beta-d-galactosidase from paracoccus sp. 32d strain in complex with galactose
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
731
structure length
731
Chain Sequence
MRVTQKLNHGWIFAEGAADPATPLAGETVTLPHNAVDLPLSYFDETSYQRAFTYQRVIAWDDAWQGRRVQLRFDGAMADNVVWVNGVQVVAHPDGYTPFVADLTDHLRPGDNLVTVRIDGSENPAIPPFGAQIDYLTYAGIYRDVWLMVLPERHLTNARILTPDALSDAKTVVIRPEVTAPGPVRARLLDGDREIAATEGEGELTLAGLTGLSLWSTDNPQLYTVELTLPDSGDVTTHRFGFRTAEWTPQGFLLNGQPMKLRGLNRHQSWAHQGYAAGRHAQERDAEIVRHDLCCNMVRTSHYPQSTWFLDRCDEIGLLVFEEIPGWQHIGDQAWQDRSVDNVRAMITRDWNHPSIVIWGVRINESPDNHDFYVRTNALARELDPTRAIGGVRCITDSEMLEDVYTMNDFILDESELPLINRPRTALRPTEEVTGIKKPVPYLVTEYNGHMFPTKAQDPELRQMEHVIRHLEVLNAAHGDPAISGCIGWCMFDYNTHKDFGAGDRICHHGVMDIWREPKFAAHAYGSQKPPSEGIVMEPVTFWARGERNIGGVLPLIVLTNCDEVEFECAGVTRRVGPDRERFPHLPRPPVIIDHRHISAEELGQWGMSWHPGRITGWLNGEQVALREYVADPLPTTLQIAPDRDTLPADGDIDLRVMLRALDQVGNRLPFLDAGIAVTVDGPARLIGPDLRMLQGGTTGMLLRLTGDAGTIRITARHPQFPEAVATVTVG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Beta-D-galactosidase
publication title Structural studies of a cold-adapted dimeric beta-D-galactosidase from Paracoccus sp. 32d.
pubmed doi rcsb
source organism Paracoccus sp. 32d
total genus 181
structure length 731
sequence length 731
ec nomenclature ec 3.2.1.23: Beta-galactosidase.
pdb deposition date 2016-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00703 Glyco_hydro_2 Glycosyl hydrolases family 2
A PF02836 Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain
A PF02837 Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain
A PF18565 Glyco_hydro2_C5 Glycoside hydrolase family 2 C-terminal domain 5
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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