5LRNA

Structure of mono-zinc mcr-1 in p21 space group
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
325
structure length
324
Chain Sequence
GPTIYHAKDAVQATKPDMRKPRLVVFVVGETARADHVSFNGYERDTFPQLAKIDGVTNFSNVTSCGTSAYSVPCMFSYLGADEYDVDTAKYQENVLDTLDRLGVSILWRDNNSDSKGVMDKLPKAQFADYKSATNNAICNTNPYNECRDVGMLVGLDDFVAANNGKDMLIMLHQMGNHGPAYFKRYDEKFAKFTPVCEGNELAKCEHQSLINAYDNALLATDDFIAQSIQWLQTHSNAYDVSMLYVSDHGESLGENGVYLHGMPNAFAPKEQRSVPAFFWTDKQTGITPMATDTVLTHDAITPTLLKLFDVTADKVKDRTAFIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Phosphatidylethanolamine transferase Mcr-1
publication title Insights into the Mechanistic Basis of Plasmid-Mediated Colistin Resistance from Crystal Structures of the Catalytic Domain of MCR-1.
pubmed doi rcsb
source organism Escherichia coli
total genus 123
structure length 324
sequence length 325
chains with identical sequence B
ec nomenclature ec 2.7.-.-:
pdb deposition date 2016-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 5lrnA00
1ELZA 1E1ZP 4LRDA 2GLQA 2RH6A 5C66A 3TWZA 1AJCA 2G9YA 5LIAA 5L0BA 1SHNA 1HJKA 4UOPA 3WBHA 5EGHA 3UN3A 3E2DA 2XR9A 4LR7A 4CXUA 4LRFA 4QAXA 3T00A 1KH9A 3TX0A 2IFYA 1EW2A 4B56A 3UN5A 3BDGB 3MK0A 3SZZA 3B5QA 3WAYA 3DYCA 1ZEFA 2GSNA 5HRTA 4MHXA 1Y7AA 1ELXA 4UPIA 4UOOA 3TG0A 3M8YA 3WAWA 1O99A 4GTWA 4ZG7A 2IUCA 3IDDA 2ZKTA 1ZEBA 1ALKA 4MY4A 2VQRA 1AJDA 4KAYA 4LRCA 5GOVA 1E2SP 2GSUA 3A52A 1ZEDA 3WAXA 1EW8A 4ZG9A 4GTYA 2W8SA 1EW9A 3MK2A 2W5WA 1HQAA 3NKRA 5L0EA 3T02A 3NKQA 4CYSA 1ALIA 1E3CP 1KH5A 1N2KA 2XRGA 4UPHA 4KM4A 4N7TA 3NVLA 3NKNA 3NKPA 3BDHA 1HDHA 2W5TA 1ALHA 1KHLA 4UORA 1URBA 1Y6VA 2W8DA 4GTZA 1ANJA 3IGYB 3BDFA 3MK1A 5DLVA 3ED4A 2W5RA 1KHNA 1KH7A 5DLWA 1O98A 3BDGA 1URAA 4LREA 4ZG6A 1K7HA 1B8JA 5LRNA 2W5SA 4CXKA 5LQQA 5IJSA 4KJDA 4GTXA 2ANHA 1ED8A 4UPKA 1ANIA 3CMRA 5EGEA 1ED9A 4CYRA 4CXSA 4LR8A 2QZUA 4ZGAA 3NKMA 1EI6A 2GA3A 3SZYA 3DPCA 1N2LA 3LXQA 4KJGA 4LRBA 3IGZB 4KAVA 5DLTA 1EJJA 1AJBA 3UNYA 3T01A 4LR9A 5KXAA 3WAVA 1ELYA 1AUKA 3OT9A 3M8WA 5AJ9A 4NWJA 1KH4A 1AJAA 5INHA 1SHQA 4LQYA 4MIVA 1ALJA 4LRAA 2GSOA 3KD8A 2D1GA 1P49A 4LR2A 4NWXA 5LRMA 4FDJA 1KHKA 3M7VA 2W5XA 5K4PA 5IJQA 3UN2A 3M8ZA 4TN0A 5TJ3A 1FSUA 1E33P 5GRRA 5L0KA 2X98A 2IUCB 3NKOA 4YR1A 3Q3QA 2W5VA 2W5QA 3UO0A 1KHJA 4UPLA 4FDIA 1EQJA
chains in the Genus database with same CATH superfamily
1ELZA 1E1ZP 4LRDA 2GLQA 2RH6A 5C66A 3TWZA 1AJCA 2G9YA 5LIAA 5L0BA 1SHNA 1HJKA 4UOPA 3WBHA 5EGHA 3UN3A 3E2DA 2XR9A 4LR7A 4CXUA 4LRFA 4QAXA 3T00A 1KH9A 3TX0A 2IFYA 1EW2A 4B56A 3UN5A 3BDGB 3MK0A 3SZZA 3B5QA 3WAYA 3DYCA 1ZEFA 2GSNA 5HRTA 4MHXA 1Y7AA 1ELXA 4UPIA 4UOOA 3TG0A 3M8YA 3WAWA 1O99A 4GTWA 4ZG7A 2IUCA 3IDDA 2ZKTA 1ZEBA 1ALKA 4MY4A 2VQRA 1AJDA 4KAYA 4LRCA 5GOVA 1E2SP 2GSUA 3A52A 1ZEDA 3WAXA 1EW8A 4ZG9A 4GTYA 2W8SA 1EW9A 3MK2A 2W5WA 1HQAA 3NKRA 5L0EA 3T02A 3NKQA 4CYSA 1ALIA 1E3CP 1KH5A 1N2KA 2XRGA 4UPHA 4KM4A 4N7TA 3NVLA 3NKNA 3NKPA 3BDHA 1HDHA 2W5TA 1ALHA 1KHLA 4UORA 1URBA 1Y6VA 2W8DA 4GTZA 1ANJA 3IGYB 3BDFA 3MK1A 5DLVA 3ED4A 2W5RA 1KHNA 1KH7A 5DLWA 1O98A 3BDGA 1URAA 4LREA 4ZG6A 1K7HA 1B8JA 5LRNA 2W5SA 4CXKA 5LQQA 5IJSA 4KJDA 4GTXA 2ANHA 1ED8A 4UPKA 1ANIA 3CMRA 5EGEA 1ED9A 4CYRA 4CXSA 4LR8A 2QZUA 4ZGAA 3NKMA 1EI6A 2GA3A 3SZYA 3DPCA 1N2LA 3LXQA 4KJGA 4LRBA 3IGZB 4KAVA 5DLTA 1EJJA 1AJBA 3UNYA 3T01A 4LR9A 5KXAA 3WAVA 1ELYA 1AUKA 3OT9A 3M8WA 5AJ9A 4NWJA 1KH4A 1AJAA 5INHA 1SHQA 4LQYA 4MIVA 1ALJA 4LRAA 2GSOA 3KD8A 2D1GA 1P49A 4LR2A 4NWXA 5LRMA 4FDJA 1KHKA 3M7VA 2W5XA 5K4PA 5IJQA 3UN2A 3M8ZA 4TN0A 5TJ3A 1FSUA 1E33P 5GRRA 5L0KA 2X98A 2IUCB 3NKOA 4YR1A 3Q3QA 2W5VA 2W5QA 3UO0A 1KHJA 4UPLA 4FDIA 1EQJA
chains in the Genus database with same CATH topology
1ELZA 1E1ZP 4LRDA 2GLQA 2RH6A 5C66A 3TWZA 1AJCA 2G9YA 5LIAA 5L0BA 1SHNA 1HJKA 4UOPA 3WBHA 5EGHA 3UN3A 3E2DA 2XR9A 4LR7A 4CXUA 4LRFA 4QAXA 3T00A 1KH9A 3TX0A 2IFYA 1EW2A 4B56A 3UN5A 3BDGB 3MK0A 3SZZA 3B5QA 3WAYA 3DYCA 1ZEFA 2GSNA 5HRTA 4MHXA 1Y7AA 1ELXA 4UPIA 4UOOA 3TG0A 3M8YA 3WAWA 1O99A 4GTWA 4ZG7A 2IUCA 3IDDA 2ZKTA 1ZEBA 1ALKA 4MY4A 2VQRA 1AJDA 4KAYA 4LRCA 5GOVA 1E2SP 2GSUA 3A52A 1ZEDA 3WAXA 1EW8A 4ZG9A 4GTYA 2W8SA 1EW9A 3MK2A 2W5WA 1HQAA 3NKRA 5L0EA 3T02A 3NKQA 4CYSA 1ALIA 1E3CP 1KH5A 1N2KA 2XRGA 4UPHA 4KM4A 4N7TA 3NVLA 3NKNA 3NKPA 3BDHA 1HDHA 2W5TA 1ALHA 1KHLA 4UORA 1URBA 1Y6VA 2W8DA 4GTZA 1ANJA 3IGYB 3BDFA 3MK1A 5DLVA 3ED4A 2W5RA 1KHNA 1KH7A 5DLWA 1O98A 3BDGA 1URAA 4LREA 4ZG6A 1K7HA 1B8JA 5LRNA 2W5SA 4CXKA 5LQQA 5IJSA 4KJDA 4GTXA 2ANHA 1ED8A 4UPKA 1ANIA 3CMRA 5EGEA 1ED9A 4CYRA 4CXSA 4LR8A 2QZUA 4ZGAA 3NKMA 1EI6A 2GA3A 3SZYA 3DPCA 1N2LA 3LXQA 4KJGA 4LRBA 3IGZB 4KAVA 5DLTA 1EJJA 1AJBA 3UNYA 3T01A 4LR9A 5KXAA 3WAVA 1ELYA 1AUKA 3OT9A 3M8WA 5AJ9A 4NWJA 1KH4A 1AJAA 5INHA 1SHQA 4LQYA 4MIVA 1ALJA 4LRAA 2GSOA 3KD8A 2D1GA 1P49A 4LR2A 4NWXA 5LRMA 4FDJA 1KHKA 3M7VA 2W5XA 5K4PA 5IJQA 3UN2A 3M8ZA 4TN0A 5TJ3A 1FSUA 1E33P 5GRRA 5L0KA 2X98A 2IUCB 3NKOA 4YR1A 3Q3QA 2W5VA 2W5QA 3UO0A 1KHJA 4UPLA 4FDIA 1EQJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ELZ A;  1E1Z P;  4LRD A;  2GLQ A;  2RH6 A;  5C66 A;  3TWZ A;  1AJC A;  2G9Y A;  5LIA A;  5L0B A;  1SHN A;  1HJK A;  4UOP A;  3WBH A;  5EGH A;  3UN3 A;  3E2D A;  2XR9 A;  4LR7 A;  4CXU A;  4LRF A;  4QAX A;  3T00 A;  1KH9 A;  3TX0 A;  2IFY A;  1EW2 A;  4B56 A;  3UN5 A;  3BDG B;  3MK0 A;  3SZZ A;  3B5Q A;  3WAY A;  3DYC A;  1ZEF A;  2GSN A;  5HRT A;  4MHX A;  1Y7A A;  1ELX A;  4UPI A;  4UOO A;  3TG0 A;  3M8Y A;  3WAW A;  1O99 A;  4GTW A;  4ZG7 A;  2IUC A;  3IDD A;  2ZKT A;  1ZEB A;  1ALK A;  4MY4 A;  2VQR A;  1AJD A;  4KAY A;  4LRC A;  5GOV A;  1E2S P;  2GSU A;  3A52 A;  1ZED A;  3WAX A;  1EW8 A;  4ZG9 A;  4GTY A;  2W8S A;  1EW9 A;  3MK2 A;  2W5W A;  1HQA A;  3NKR A;  5L0E A;  3T02 A;  3NKQ A;  4CYS A;  1ALI A;  1E3C P;  1KH5 A;  1N2K A;  2XRG A;  4UPH A;  4KM4 A;  4N7T A;  3NVL A;  3NKN A;  3NKP A;  3BDH A;  1HDH A;  2W5T A;  1ALH A;  1KHL A;  4UOR A;  1URB A;  1Y6V A;  2W8D A;  4GTZ A;  1ANJ A;  3IGY B;  3BDF A;  3MK1 A;  5DLV A;  3ED4 A;  2W5R A;  1KHN A;  1KH7 A;  5DLW A;  1O98 A;  3BDG A;  1URA A;  4LRE A;  4ZG6 A;  1K7H A;  1B8J A;  5LRN A;  2W5S A;  4CXK A;  5LQQ A;  5IJS A;  4KJD A;  4GTX A;  2ANH A;  1ED8 A;  4UPK A;  1ANI A;  3CMR A;  5EGE A;  1ED9 A;  4CYR A;  4CXS A;  4LR8 A;  2QZU A;  4ZGA A;  3NKM A;  1EI6 A;  2GA3 A;  3SZY A;  3DPC A;  1N2L A;  3LXQ A;  4KJG A;  4LRB A;  3IGZ B;  4KAV A;  5DLT A;  1EJJ A;  1AJB A;  3UNY A;  3T01 A;  4LR9 A;  5KXA A;  3WAV A;  1ELY A;  1AUK A;  3OT9 A;  3M8W A;  5AJ9 A;  4NWJ A;  1KH4 A;  1AJA A;  5INH A;  1SHQ A;  4LQY A;  4MIV A;  1ALJ A;  4LRA A;  2GSO A;  3KD8 A;  2D1G A;  1P49 A;  4LR2 A;  4NWX A;  5LRM A;  4FDJ A;  1KHK A;  3M7V A;  2W5X A;  5K4P A;  5IJQ A;  3UN2 A;  3M8Z A;  4TN0 A;  5TJ3 A;  1FSU A;  1E33 P;  5GRR A;  5L0K A;  2X98 A;  2IUC B;  3NKO A;  4YR1 A;  3Q3Q A;  2W5V A;  2W5Q A;  3UO0 A;  1KHJ A;  4UPL A;  4FDI A;  1EQJ A; 
#chains in the Genus database with same CATH topology
 1ELZ A;  1E1Z P;  4LRD A;  2GLQ A;  2RH6 A;  5C66 A;  3TWZ A;  1AJC A;  2G9Y A;  5LIA A;  5L0B A;  1SHN A;  1HJK A;  4UOP A;  3WBH A;  5EGH A;  3UN3 A;  3E2D A;  2XR9 A;  4LR7 A;  4CXU A;  4LRF A;  4QAX A;  3T00 A;  1KH9 A;  3TX0 A;  2IFY A;  1EW2 A;  4B56 A;  3UN5 A;  3BDG B;  3MK0 A;  3SZZ A;  3B5Q A;  3WAY A;  3DYC A;  1ZEF A;  2GSN A;  5HRT A;  4MHX A;  1Y7A A;  1ELX A;  4UPI A;  4UOO A;  3TG0 A;  3M8Y A;  3WAW A;  1O99 A;  4GTW A;  4ZG7 A;  2IUC A;  3IDD A;  2ZKT A;  1ZEB A;  1ALK A;  4MY4 A;  2VQR A;  1AJD A;  4KAY A;  4LRC A;  5GOV A;  1E2S P;  2GSU A;  3A52 A;  1ZED A;  3WAX A;  1EW8 A;  4ZG9 A;  4GTY A;  2W8S A;  1EW9 A;  3MK2 A;  2W5W A;  1HQA A;  3NKR A;  5L0E A;  3T02 A;  3NKQ A;  4CYS A;  1ALI A;  1E3C P;  1KH5 A;  1N2K A;  2XRG A;  4UPH A;  4KM4 A;  4N7T A;  3NVL A;  3NKN A;  3NKP A;  3BDH A;  1HDH A;  2W5T A;  1ALH A;  1KHL A;  4UOR A;  1URB A;  1Y6V A;  2W8D A;  4GTZ A;  1ANJ A;  3IGY B;  3BDF A;  3MK1 A;  5DLV A;  3ED4 A;  2W5R A;  1KHN A;  1KH7 A;  5DLW A;  1O98 A;  3BDG A;  1URA A;  4LRE A;  4ZG6 A;  1K7H A;  1B8J A;  5LRN A;  2W5S A;  4CXK A;  5LQQ A;  5IJS A;  4KJD A;  4GTX A;  2ANH A;  1ED8 A;  4UPK A;  1ANI A;  3CMR A;  5EGE A;  1ED9 A;  4CYR A;  4CXS A;  4LR8 A;  2QZU A;  4ZGA A;  3NKM A;  1EI6 A;  2GA3 A;  3SZY A;  3DPC A;  1N2L A;  3LXQ A;  4KJG A;  4LRB A;  3IGZ B;  4KAV A;  5DLT A;  1EJJ A;  1AJB A;  3UNY A;  3T01 A;  4LR9 A;  5KXA A;  3WAV A;  1ELY A;  1AUK A;  3OT9 A;  3M8W A;  5AJ9 A;  4NWJ A;  1KH4 A;  1AJA A;  5INH A;  1SHQ A;  4LQY A;  4MIV A;  1ALJ A;  4LRA A;  2GSO A;  3KD8 A;  2D1G A;  1P49 A;  4LR2 A;  4NWX A;  5LRM A;  4FDJ A;  1KHK A;  3M7V A;  2W5X A;  5K4P A;  5IJQ A;  3UN2 A;  3M8Z A;  4TN0 A;  5TJ3 A;  1FSU A;  1E33 P;  5GRR A;  5L0K A;  2X98 A;  2IUC B;  3NKO A;  4YR1 A;  3Q3Q A;  2W5V A;  2W5Q A;  3UO0 A;  1KHJ A;  4UPL A;  4FDI A;  1EQJ A; 
#chains in the Genus database with same CATH homology
 1ELZ A;  1E1Z P;  4LRD A;  2GLQ A;  2RH6 A;  5C66 A;  3TWZ A;  1AJC A;  2G9Y A;  5LIA A;  5L0B A;  1SHN A;  1HJK A;  4UOP A;  3WBH A;  5EGH A;  3UN3 A;  3E2D A;  2XR9 A;  4LR7 A;  4CXU A;  4LRF A;  4QAX A;  3T00 A;  1KH9 A;  3TX0 A;  2IFY A;  1EW2 A;  4B56 A;  3UN5 A;  3BDG B;  3MK0 A;  3SZZ A;  3B5Q A;  3WAY A;  3DYC A;  1ZEF A;  2GSN A;  5HRT A;  4MHX A;  1Y7A A;  1ELX A;  4UPI A;  4UOO A;  3TG0 A;  3M8Y A;  3WAW A;  1O99 A;  4GTW A;  4ZG7 A;  2IUC A;  3IDD A;  2ZKT A;  1ZEB A;  1ALK A;  4MY4 A;  2VQR A;  1AJD A;  4KAY A;  4LRC A;  5GOV A;  1E2S P;  2GSU A;  3A52 A;  1ZED A;  3WAX A;  1EW8 A;  4ZG9 A;  4GTY A;  2W8S A;  1EW9 A;  3MK2 A;  2W5W A;  1HQA A;  3NKR A;  5L0E A;  3T02 A;  3NKQ A;  4CYS A;  1ALI A;  1E3C P;  1KH5 A;  1N2K A;  2XRG A;  4UPH A;  4KM4 A;  4N7T A;  3NVL A;  3NKN A;  3NKP A;  3BDH A;  1HDH A;  2W5T A;  1ALH A;  1KHL A;  4UOR A;  1URB A;  1Y6V A;  2W8D A;  4GTZ A;  1ANJ A;  3IGY B;  3BDF A;  3MK1 A;  5DLV A;  3ED4 A;  2W5R A;  1KHN A;  1KH7 A;  5DLW A;  1O98 A;  3BDG A;  1URA A;  4LRE A;  4ZG6 A;  1K7H A;  1B8J A;  5LRN A;  2W5S A;  4CXK A;  5LQQ A;  5IJS A;  4KJD A;  4GTX A;  2ANH A;  1ED8 A;  4UPK A;  1ANI A;  3CMR A;  5EGE A;  1ED9 A;  4CYR A;  4CXS A;  4LR8 A;  2QZU A;  4ZGA A;  3NKM A;  1EI6 A;  2GA3 A;  3SZY A;  3DPC A;  1N2L A;  3LXQ A;  4KJG A;  4LRB A;  3IGZ B;  4KAV A;  5DLT A;  1EJJ A;  1AJB A;  3UNY A;  3T01 A;  4LR9 A;  5KXA A;  3WAV A;  1ELY A;  1AUK A;  3OT9 A;  3M8W A;  5AJ9 A;  4NWJ A;  1KH4 A;  1AJA A;  5INH A;  1SHQ A;  4LQY A;  4MIV A;  1ALJ A;  4LRA A;  2GSO A;  3KD8 A;  2D1G A;  1P49 A;  4LR2 A;  4NWX A;  5LRM A;  4FDJ A;  1KHK A;  3M7V A;  2W5X A;  5K4P A;  5IJQ A;  3UN2 A;  3M8Z A;  4TN0 A;  5TJ3 A;  1FSU A;  1E33 P;  5GRR A;  5L0K A;  2X98 A;  2IUC B;  3NKO A;  4YR1 A;  3Q3Q A;  2W5V A;  2W5Q A;  3UO0 A;  1KHJ A;  4UPL A;  4FDI A;  1EQJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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