5LZKA

Structure of the domain of unknown function duf1669 from human fam83b
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
169
structure length
169
Chain Sequence
GTHIDLLFHPPRAHLLTIKETIRKMIKEARKVIALVMDIFTDVDIFKEIVEASTRGVSVYILLDESNFNHFLNMTEKQGCSVQRLRNIRVRTVKGQDYLSKTGAKFHGKMEQKFLLVDCQKVMYGSYSYMWSFEKAHLSMVQIITGQLVESFDEEFRTLYARSCVPSSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics
molecule keywords Protein FAM83B
publication title Structure of the domain of unknown function DUF1669 from human FAM83B
rcsb
source organism Homo sapiens
total genus 51
structure length 169
sequence length 169
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-09-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.870.10 Alpha Beta 2-Layer Sandwich Endonuclease; Chain A Endonuclease Chain A 5lzkA00
3SQ7A 1V0TA 2O8RA 2F5TX 1RH0A 1XDOA 5BOXA 4GELA 4URJA 1MU7A 4RCTA 3QPHA 1V0WA 5BPDA 1BYSA 3SQ3A 4GEMA 1V0RA 1QZQA 1V0VA 1MU9A 1JY1A 1V0UA 4GGKA 1RFIA 1F0IA 2C1LA 5BQTA 1Q32A 3HSIA 1V0YA 1XDPA 4GGJA 3SQ5A 5BPIA 1NOPA 2ZE4A 1BYRA 4GENA 1RG1A 1RGUA 1RGTA 1V0SA 1RFFA 3SQ8A 1RG2A 4H4AA 2ZE9A 5LZKA
chains in the Genus database with same CATH superfamily
3SQ7A 3HRLA 1ODGA 1V0TA 2O8RA 2F5TX 1RH0A 1CW0A 1XDOA 5BOXA 4GELA 4URJA 1MU7A 4RCTA 3QPHA 2YMBA 3R3PA 1V0WA 5BPDA 1BYSA 3SQ3A 4GEMA 1V0RA 1QZQA 1V0VA 1MU9A 1JY1A 1V0UA 4GGKA 1RFIA 1VSRA 1F0IA 2C1LA 5BQTA 1Q32A 3HSIA 1V0YA 1XDPA 4GGJA 3SQ5A 5BPIA 1NOPA 2ZE4A 1BYRA 4GENA 1RG1A 1RGUA 1RGTA 1V0SA 4A5ZA 1RFFA 3SQ8A 1RG2A 4H4AA 2ZE9A 5LZKA
chains in the Genus database with same CATH topology
3SQ7A 1V0TA 2O8RA 2F5TX 1RH0A 1XDOA 5BOXA 4GELA 4URJA 1MU7A 4RCTA 3QPHA 1V0WA 5BPDA 1BYSA 3SQ3A 4GEMA 1V0RA 1QZQA 1V0VA 1MU9A 1JY1A 1V0UA 4GGKA 1RFIA 1F0IA 2C1LA 5BQTA 1Q32A 3HSIA 1V0YA 1XDPA 4GGJA 3SQ5A 5BPIA 1NOPA 2ZE4A 1BYRA 4GENA 1RG1A 1RGUA 1RGTA 1V0SA 1RFFA 3SQ8A 1RG2A 4H4AA 2ZE9A 5LZKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SQ7 A;  1V0T A;  2O8R A;  2F5T X;  1RH0 A;  1XDO A;  5BOX A;  4GEL A;  4URJ A;  1MU7 A;  4RCT A;  3QPH A;  1V0W A;  5BPD A;  1BYS A;  3SQ3 A;  4GEM A;  1V0R A;  1QZQ A;  1V0V A;  1MU9 A;  1JY1 A;  1V0U A;  4GGK A;  1RFI A;  1F0I A;  2C1L A;  5BQT A;  1Q32 A;  3HSI A;  1V0Y A;  1XDP A;  4GGJ A;  3SQ5 A;  5BPI A;  1NOP A;  2ZE4 A;  1BYR A;  4GEN A;  1RG1 A;  1RGU A;  1RGT A;  1V0S A;  1RFF A;  3SQ8 A;  1RG2 A;  4H4A A;  2ZE9 A;  5LZK A; 
#chains in the Genus database with same CATH topology
 3SQ7 A;  3HRL A;  1ODG A;  1V0T A;  2O8R A;  2F5T X;  1RH0 A;  1CW0 A;  1XDO A;  5BOX A;  4GEL A;  4URJ A;  1MU7 A;  4RCT A;  3QPH A;  2YMB A;  3R3P A;  1V0W A;  5BPD A;  1BYS A;  3SQ3 A;  4GEM A;  1V0R A;  1QZQ A;  1V0V A;  1MU9 A;  1JY1 A;  1V0U A;  4GGK A;  1RFI A;  1VSR A;  1F0I A;  2C1L A;  5BQT A;  1Q32 A;  3HSI A;  1V0Y A;  1XDP A;  4GGJ A;  3SQ5 A;  5BPI A;  1NOP A;  2ZE4 A;  1BYR A;  4GEN A;  1RG1 A;  1RGU A;  1RGT A;  1V0S A;  4A5Z A;  1RFF A;  3SQ8 A;  1RG2 A;  4H4A A;  2ZE9 A;  5LZK A; 
#chains in the Genus database with same CATH homology
 3SQ7 A;  1V0T A;  2O8R A;  2F5T X;  1RH0 A;  1XDO A;  5BOX A;  4GEL A;  4URJ A;  1MU7 A;  4RCT A;  3QPH A;  1V0W A;  5BPD A;  1BYS A;  3SQ3 A;  4GEM A;  1V0R A;  1QZQ A;  1V0V A;  1MU9 A;  1JY1 A;  1V0U A;  4GGK A;  1RFI A;  1F0I A;  2C1L A;  5BQT A;  1Q32 A;  3HSI A;  1V0Y A;  1XDP A;  4GGJ A;  3SQ5 A;  5BPI A;  1NOP A;  2ZE4 A;  1BYR A;  4GEN A;  1RG1 A;  1RGU A;  1RGT A;  1V0S A;  1RFF A;  3SQ8 A;  1RG2 A;  4H4A A;  2ZE9 A;  5LZK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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