5NGMAW

2.9s structure of the 70s ribosome composing the s. aureus 100s complex
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
67
structure length
67
Chain Sequence
KAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIEQSKAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S ribosomal RNA
publication title The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus.
pubmed doi rcsb
total genus 18
structure length 67
sequence length 67
ec nomenclature
pdb deposition date 2017-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
AW PF00831 Ribosomal_L29 Ribosomal L29 protein
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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