5RGBA

Crystal structure of kemp eliminase hg3.3b with bound transition state analogue, 277k
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
299
structure length
299
Chain Sequence
QSIDQLIKARGKVYFGVATDQNRLTTGKNAAIIQADFGMVWPENSMHWDATEPSQGNFNFAGADYLVNWAQQNGKLIGGGCLVWHRDLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRNWDVVGEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYIMDYNLDSASYPKTQAIVNRVKQWRAAGVPIDGIGSQTHLSAGQGAGVLQALPLLASAGTPEVSILMLDVAGASPTDYVNVVNACLNVQSCVGITVFGVADPDSWRASTTPLLFDGNFNPKPAYNAIVQDLQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Kemp Eliminase HG3.3b
publication title Evolution of an enzyme conformational ensembles guides the design of an efficient biocatalyst
rcsb
source organism Thermoascus aurantiacus
total genus 115
structure length 299
sequence length 299
chains with identical sequence B
ec nomenclature ec 3.2.1.8: Endo-1,4-beta-xylanase.
pdb deposition date 2020-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00331 Glyco_hydro_10 Glycosyl hydrolase family 10
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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