5XMDA

Crystal structure of epoxide hydrolase vreh1 from vigna radiata
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
322
structure length
320
Chain Sequence
RGSMEEIEHRTVEVNGIKMHVAEKGEGPVVLFLHGFPELWYSWRHQILALSSRGYRAVAPDLRGYGDTEAPESISSYTIMHLVGDIVALIDSLGVGQVFLVAHDWGAIVGWYLCLFRPEKIKAYVCLSVPFMPRNPKVRPVDAMRALYGDDYYICRFQEPGKAEALYGSNIGEVIKSILTNRRPGPPILPKEGVALPSGSLPSRPLPSWLSEEDVTYYASKFSKTGLTGGLNYYRNLNLNWELTAAWTGAKVKVPVKFITGDLDVVYTSLGIKDYIDSGAFKRDVPYLEEVVVQEGVAHFNNQEAAEDISNHIYEFIKKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Carboxyl reductase
rcsb
source organism Vigna radiata
molecule tags Hydrolase
molecule keywords Epoxide hydrolase A
total genus 124
structure length 320
sequence length 322
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2017-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00561 Abhydrolase_1 alpha/beta hydrolase fold
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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