5XOGM

Rna polymerase ii elongation complex bound with spt5 kow5 and elf1
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
64
structure length
64
Chain Sequence
IKQKLETQFTCLFCNHDNSVVCTLDKKNSIGLLECKKCGQRFQAPINSLSQPIDIYSDWIDACE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-directed RNA polymerase subunit
publication title Structure of the complete elongation complex of RNA polymerase II with basal factors
pubmed doi rcsb
source organism Komagataella pastoris
total genus 14
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2017-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF05129 Elf1 Transcription elongation factor Elf1 like
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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