5XONW

Rna polymerase ii elongation complex bound with spt4/5 and tfiis
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
597
structure length
329
Chain Sequence
PQRLLIPTVDDPGIWGVKVRLGKEKDVVRQILKKKLAREGTKNPLEIYSAFQRDSFKGHVYIEARKAEAINDALKGNVNVFSNNSKFLVGIVEYKDLLRPVSDVKLTRGSYVRVKNGKFKGDLAQVDEVLENGLEARLKLVPRLDYGKDLSYTSKFRPAQRLFSEAEARVHEIRRDRDGFVTYGGEEYYEGFLYKTFRLQNLIVNSINPTLNELSLFEVKVGDTVREFTGERRQGTILHVYRNFLFLRSREIVENQGVFVTSSNRVGRDPTLNKTVKIRQGGYKGKIGIVKEANGDRFRVELHNPNKTIPIPCSFLLIESTHGWVPYED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/rna
molecule keywords DNA-directed RNA polymerase subunit
publication title Structure of the complete elongation complex of RNA polymerase II with basal factors
pubmed doi rcsb
source organism Komagataella phaffii (strain gs115 / atcc 20864)
total genus 64
structure length 329
sequence length 597
ec nomenclature
pdb deposition date 2017-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00467 KOW KOW motif
W PF03439 Spt5-NGN Early transcription elongation factor of RNA pol II, NGN section
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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