5XTHP

Cryo-em structure of human respiratory supercomplex i1iii2iv1
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
208
structure length
208
Chain Sequence
TRPTVRPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase/electron transport
molecule keywords NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondria
publication title Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2.
pubmed doi rcsb
total genus 26
structure length 208
sequence length 208
ec nomenclature ec 1.6.99.3: NADH dehydrogenase.
pdb deposition date 2017-06-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF00329 Complex1_30kDa Respiratory-chain NADH dehydrogenase, 30 Kd subunit
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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