5XTYA

Crystal structure of 11s allergen from cocos nucifera l.
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
402
structure length
359
Chain Sequence
CRIERLNALEPTRTVRSEAGVTDYFDEDNEQFRCAGVSTIRRVIEPRGLLLPSMSNAPRLVYIVQGRGIVGLVMPGCPETFRWSRDEHQKVYQFQEGDVLAVPNGFAYWCYNNGENPVVAITVLDTSNDANQLDRSHRQFLLAGREGSIKENILRGFSTELLAAAFGVNMERKLQCRDDTRGEIVRAENGLQVLRPSGMEEETYCSMKIKQNIGDPRRADVFNPRGGRITTLNSEKLPILRFIQMSAERVVLYRNAMVSPHWNINAHSIMYCTGGRGRVEVADDRGETVFDGELRQGQLLIVPQNFAMLERAGSAGFQLVSIKTSDRAMVSTVVGLRGMPVEVLMNSYRLSRDEARRVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Allergen
molecule keywords 11S globulin isoform 1
publication title Crystal structure determination and analysis of 11S coconut allergen: Cocosin
pubmed doi rcsb
total genus 67
structure length 359
sequence length 402
chains with identical sequence B
ec nomenclature
pdb deposition date 2017-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00190 Cupin_1 Cupin
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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