5Y88b

Cryo-em structure of the intron-lariat spliceosome ready for disassembly from s.cerevisiae at 3.5 angstrom
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
83
structure length
75
Chain Sequence
MVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIPVNSKGTPLGKILLKGDNITLITS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Splicing
molecule keywords Pre-mRNA-splicing factor 8
publication title Structure of an Intron Lariat Spliceosome from Saccharomyces cerevisiae
pubmed doi rcsb
total genus 7
structure length 75
sequence length 83
chains with identical sequence i
ec nomenclature
pdb deposition date 2017-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
b PF01423 LSM LSM domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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