5YEJA

Crystal structure of bioq with its naturel double-stranded dna operator
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
187
structure length
169
Chain Sequence
QLHKPDVVAAATKILDDHGIADLTMRRLARELDVTPGALYWHFANKQELLGAVADHILRTARTDTADLAWREQIHESCRALRDALLSHTDGAELVSASFASGQSVVITEIVEQLGRAARAAGVSDADVDAAARTVIYYVLGFTVDEQSRLQWRQFRFGLQLLVDGLAAH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein/dna
molecule keywords TetR family transcriptional regulator
publication title Structural insights into operator recognition by BioQ in the Mycobacterium smegmatis biotin synthesis pathway.
pubmed doi rcsb
source organism Mycobacterium smegmatis
total genus 62
structure length 169
sequence length 187
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2017-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00440 TetR_N Bacterial regulatory proteins, tetR family
A PF02909 TetR_C_1 Tetracyclin repressor-like, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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