6GEPA

Sulfite reductase hemoprotein nitric oxide complex reduced with proflavine edta
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
490
structure length
456
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords SULFITE REDUCTASE HEMOPROTEIN
publication title Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
pubmed doi rcsb
source organism Escherichia coli
total genus 159
structure length 456
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 6gepA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 6gepA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 6gepA02
3GEOA 3B0GA 4G9PA 3VM0A 1ZJ8A 4G38A 3B0JA 7GEPA 2AKJA 3MM8A 3VLYA 3OR1A 1ZJ9A 3VM1A 6GEPA 3MM8B 4G39A 2Y0FA 5GEPA 3MM6A 3MM9A 2AOPA 5AOPA 4AOPA 3OR1B 3VKSA 3VKQA 2GEPA 3B0NA 3MM9B 1AOPA 4GEPA 4S23A 3VLXA 3MM6B 2XSJA 3NOYA 8GEPA 3MMCA 3OR2A 3MM5A 4S3BA 2XSJB 3MMCB 3OR2B 4S38A 2V4JA 3MM5B 3B0MA 2V4JB 3VKPA 3MMBA 3MM7A 4S3FA 3AOPA 4S3EA 3MMAA 4S3AA 4S39A 3MM7B 3VKRA 3B0HA 3MMAB 3VKTA 3MMBB 4S3DA 4S3CA 3VLZA 4HTRA 3B0LA
chains in the Genus database with same CATH superfamily
3GEOA 3B0GA 4G9PA 3VM0A 1ZJ8A 4G38A 3B0JA 7GEPA 2AKJA 3MM8A 3VLYA 3OR1A 1ZJ9A 3VM1A 6GEPA 3MM8B 4G39A 2Y0FA 5GEPA 3MM6A 3MM9A 2AOPA 5AOPA 4AOPA 3OR1B 3VKSA 3VKQA 2GEPA 3B0NA 3MM9B 1AOPA 4GEPA 4S23A 3VLXA 3MM6B 2XSJA 3NOYA 8GEPA 3MMCA 3OR2A 3MM5A 4S3BA 2XSJB 3MMCB 3OR2B 4S38A 2V4JA 3MM5B 3B0MA 2V4JB 3VKPA 3MMBA 3MM7A 4S3FA 3AOPA 4S3EA 3MMAA 4S3AA 4S39A 3MM7B 3VKRA 3B0HA 3MMAB 3VKTA 3MMBB 4S3DA 4S3CA 3VLZA 4HTRA 3B0LA
chains in the Genus database with same CATH topology
3GEOA 3B0GA 4G9PA 3VM0A 1ZJ8A 4G38A 3B0JA 7GEPA 2AKJA 3MM8A 3VLYA 3OR1A 1ZJ9A 3VM1A 6GEPA 3MM8B 4G39A 2Y0FA 5GEPA 3MM6A 3MM9A 2AOPA 5AOPA 4AOPA 3OR1B 3VKSA 3VKQA 2GEPA 3B0NA 3MM9B 1AOPA 4GEPA 4S23A 3VLXA 3MM6B 2XSJA 3NOYA 8GEPA 3MMCA 3OR2A 3MM5A 4S3BA 2XSJB 3MMCB 3OR2B 4S38A 2V4JA 3MM5B 3B0MA 2V4JB 3VKPA 3MMBA 3MM7A 4S3FA 3AOPA 4S3EA 3MMAA 4S3AA 4S39A 3MM7B 3VKRA 3B0HA 3MMAB 3VKTA 3MMBB 4S3DA 4S3CA 3VLZA 4HTRA 3B0LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GEO A;  3B0G A;  4G9P A;  3VM0 A;  1ZJ8 A;  4G38 A;  3B0J A;  7GEP A;  2AKJ A;  3MM8 A;  3VLY A;  3OR1 A;  1ZJ9 A;  3VM1 A;  6GEP A;  3MM8 B;  4G39 A;  2Y0F A;  5GEP A;  3MM6 A;  3MM9 A;  2AOP A;  5AOP A;  4AOP A;  3OR1 B;  3VKS A;  3VKQ A;  2GEP A;  3B0N A;  3MM9 B;  1AOP A;  4GEP A;  4S23 A;  3VLX A;  3MM6 B;  2XSJ A;  3NOY A;  8GEP A;  3MMC A;  3OR2 A;  3MM5 A;  4S3B A;  2XSJ B;  3MMC B;  3OR2 B;  4S38 A;  2V4J A;  3MM5 B;  3B0M A;  2V4J B;  3VKP A;  3MMB A;  3MM7 A;  4S3F A;  3AOP A;  4S3E A;  3MMA A;  4S3A A;  4S39 A;  3MM7 B;  3VKR A;  3B0H A;  3MMA B;  3VKT A;  3MMB B;  4S3D A;  4S3C A;  3VLZ A;  4HTR A;  3B0L A; 
#chains in the Genus database with same CATH topology
 3GEO A;  3B0G A;  4G9P A;  3VM0 A;  1ZJ8 A;  4G38 A;  3B0J A;  7GEP A;  2AKJ A;  3MM8 A;  3VLY A;  3OR1 A;  1ZJ9 A;  3VM1 A;  6GEP A;  3MM8 B;  4G39 A;  2Y0F A;  5GEP A;  3MM6 A;  3MM9 A;  2AOP A;  5AOP A;  4AOP A;  3OR1 B;  3VKS A;  3VKQ A;  2GEP A;  3B0N A;  3MM9 B;  1AOP A;  4GEP A;  4S23 A;  3VLX A;  3MM6 B;  2XSJ A;  3NOY A;  8GEP A;  3MMC A;  3OR2 A;  3MM5 A;  4S3B A;  2XSJ B;  3MMC B;  3OR2 B;  4S38 A;  2V4J A;  3MM5 B;  3B0M A;  2V4J B;  3VKP A;  3MMB A;  3MM7 A;  4S3F A;  3AOP A;  4S3E A;  3MMA A;  4S3A A;  4S39 A;  3MM7 B;  3VKR A;  3B0H A;  3MMA B;  3VKT A;  3MMB B;  4S3D A;  4S3C A;  3VLZ A;  4HTR A;  3B0L A; 
#chains in the Genus database with same CATH homology
 3GEO A;  3B0G A;  4G9P A;  3VM0 A;  1ZJ8 A;  4G38 A;  3B0J A;  7GEP A;  2AKJ A;  3MM8 A;  3VLY A;  3OR1 A;  1ZJ9 A;  3VM1 A;  6GEP A;  3MM8 B;  4G39 A;  2Y0F A;  5GEP A;  3MM6 A;  3MM9 A;  2AOP A;  5AOP A;  4AOP A;  3OR1 B;  3VKS A;  3VKQ A;  2GEP A;  3B0N A;  3MM9 B;  1AOP A;  4GEP A;  4S23 A;  3VLX A;  3MM6 B;  2XSJ A;  3NOY A;  8GEP A;  3MMC A;  3OR2 A;  3MM5 A;  4S3B A;  2XSJ B;  3MMC B;  3OR2 B;  4S38 A;  2V4J A;  3MM5 B;  3B0M A;  2V4J B;  3VKP A;  3MMB A;  3MM7 A;  4S3F A;  3AOP A;  4S3E A;  3MMA A;  4S3A A;  4S39 A;  3MM7 B;  3VKR A;  3B0H A;  3MMA B;  3VKT A;  3MMB B;  4S3D A;  4S3C A;  3VLZ A;  4HTR A;  3B0L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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