6AD0A

The structure of cva10 mature virion in complex with fab 2g8
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
296
structure length
285
Chain Sequence
DPVEDIIHRAISSATNVESAANTTPSSHRLETGRVPALQAAETGATSNATDENMIETRCVVNRNGVLETTINHFFSRSGLVGVVNLTDGTTGYATWDIDIMGFVQLRRKCEMFTYMRFNAEFTFVTTTENGGARPYMLQYMYVPPGAPKPTGRDAFQWQTATNPSVFVKLTDPPAQVSVPFMSPASAYQWFYDGYPTFGQHPETSNTTYGLCPNNMMGTFAVRVVSREASQLKLQTRVYMKLKHVRAWVPRPIRSQPYLLKNFPNYDSSKITNSARDRSSIKQAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus/immune system
molecule keywords VL of Fab 2G8
publication title Discovery and structural characterization of a therapeutic antibody against coxsackievirus A10.
pubmed doi rcsb
total genus 20
structure length 285
sequence length 296
ec nomenclature
pdb deposition date 2018-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00073 Rhv picornavirus capsid protein
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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