6CZR11

The structure of amicetin bound to the 70s ribosome
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
97
structure length
97
Chain Sequence
SKVCEISGKRPIVANSIQRRGKAKREGGVGKKTTGISKRRQYPNLQKVRVRVAGQEITFRVAASHIPKVYELVERAKGLKLEGLSPKEIKKELLKLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 23S Ribosomal RNA
publication title Unifying aminohexopyranose nucleoside antibiotics: implications for antibiotic design
rcsb
total genus 12
structure length 97
sequence length 97
chains with identical sequence 21
ec nomenclature
pdb deposition date 2018-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
11 PF00830 Ribosomal_L28 Ribosomal L28 family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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