6DFZA

Acropora millepora gapdh
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
332
structure length
332
Chain Sequence
VKVGINGFGRIGRLVMRASLEHPEVQVVAVNDPFIDLEYMEYMFKYDSTHGRFKGTTEVKDGKLVINGNPISVYALKDPAAIPWKEAGADFVVESTGVFTTTEKASAHLHGGAKKVIISAPSADAPMFVMGVNEKTYDAATMNVVSNASCTTNCLAPLAKVINDNFGIEEGLMTTIHAYTATQKTVDGPSGKKWRDGRGANQNVIPATTGAAKAVGKVIPELNGKLTGMAFRVPVPDVSVVDLTCRLKKPTSYEEIKKVVKKASETDLKGFLAYTEDQVVSSDFISDTHSSVFDALAGIQLNPTFVKLVSWYDNEYGYSHRVVDLIEYMATK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords glyceraldehyde-3-phosphate dehydrogenase
publication title Structure of GAPDH from the coral Acropora millepora
rcsb
source organism Acropora millepora
total genus 114
structure length 332
sequence length 332
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 1.2.1.12: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating).
pdb deposition date 2018-05-16
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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