6DHFR

Rt xfel structure of the one-flash state of photosystem ii (1f, s2-rich) at 2.08 angstrom resolution
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
34
structure length
34
Chain Sequence
DWRVLVVLLPVLLAAGWAVRNILPYAVKQVQKLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords Photosystem II protein D1 1
publication title Structures of the intermediates of Kok's photosynthetic water oxidation clock.
pubmed doi rcsb
total genus 12
structure length 34
sequence length 34
chains with identical sequence r
ec nomenclature
pdb deposition date 2018-05-20
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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