6EBXA

Structure determination of a dimeric form of erabutoxin b, crystallized from thiocyanate solution
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
62
structure length
62
Chain Sequence
RICFNHQSSQPQTTKTCSPGESSCYHKQWSDFRGTIIERGCGCPTVKPGIKLSCCESEVCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords ERABUTOXIN B
publication title Structure determination of a dimeric form of erabutoxin-b, crystallized from a thiocyanate solution.
pubmed doi rcsb
source organism Laticauda semifasciata
total genus 11
structure length 62
sequence length 62
chains with identical sequence B
ec nomenclature
pdb deposition date 1991-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 6ebxA00
1XT3A 1FRAA 3ERAA 4DO8A 1HAAA 4OM4A 2HLRA 1DRSA 2CTXA 1NORA 2BHIA 1CDTA 2CRTA 2QJAC 2QJBC 1F8UB 2LCRA 1S4YA 1ES7B 2H7ZB 3BT2U 1NTXA 1TGXA 2L5SA 3QB4B 3FEVA 1ZADA 1CVOA 2CCXA 1G6MA 1I02A 2ABXA 2PJYB 1MR6A 1KXIA 1UG4A 1KFHA 1HC9B 2MJYA 1M9ZA 5DU1A 1NXBA 1BXPA 1FFJA 2BTXA 2CRSA 1FSCA 1NTNA 6EBXA 4EY8B 2J8BA 1QM7A 1JE9A 1YWHA 1IDHA 1PLOA 2X8BB 3LAQU 1V6PA 4HQPF 1CDSA 5IMTD 2H5FA 4FAOC 1KS6A 2H7ZA 2QC1A 2H8UA 1NEAA 2FD6U 1LXHA 2H62D 2NBTA 1JGKA 1ERGA 1L4WA 4XJJA 1FSSB 1CRFA 3VTSA 1ABTA 1BTEA 1LJZA 2HLQA 2LA1A 1IJCA 1QKEA 1FF4A 2H64C 2L03A 2QJ9C 2MUPA 4BIKB 1LSIA 1CB9A 2MUOA 2GOOB 5DO6A 4AEAA 1IDLA 1HC9A 4P7UA 2MHYA 1KTZB 1W6BA 2H62C 1RL5A 1TXBA 2CDXA 4QTIU 4RUDA 1NYUA 3EBXA 1IK8A 4BDTB 1CCQA 2PJYC 1RGJA 2JVEA 1CREA 3PLCA 3KFDE 1IQ9A 2N99A 2VLWA 3NDSA 1REWC 5IMYC 3KFDI 2MJ4A 1ERAA 4UY2C 3U73U 5DZ5A 2MJ0A 2MFAA 1HOYA 4LFTA 1H0JA 4IYEA 3EVSC 1KL8A 1CXNA 1QKDA 2K3GA 1TFSA 1VB0A 3U74U 1JBDA 1COEA 1LXGA 2ERAA 1ONJA 2OFSA 1CHVS 1B41B 1HAJA 1CTXA 3NEQA 1NYSA 1KU6B 2H64B 1TXAA 3NH7A 4FAOE 5EBXA 1CODA 1F94A 1IDGA 1LX5B 2UX2A 1FASA 1KBAA 1IDIA 3BT1U 4OM5A 2GOOC 1CXOA 2UWRA 4ZQYA 1MAHF 1KC4A 1KBSA 1KBTA 2JQPA 2I9BE 3HH7A 1CDQA 1IKCA 1CDRA
chains in the Genus database with same CATH superfamily
1XT3A 1FRAA 3ERAA 4DO8A 1HAAA 4OM4A 2HLRA 1DRSA 2CTXA 1NORA 2BHIA 1CDTA 2CRTA 2QJAC 2QJBC 1F8UB 2LCRA 1S4YA 1ES7B 2H7ZB 3BT2U 1NTXA 1TGXA 2L5SA 3QB4B 4KSNA 3FEVA 1ZADA 1CVOA 2CCXA 1G6MA 1I02A 2ABXA 2PJYB 1MR6A 1KXIA 1UG4A 1KFHA 1HC9B 2MJYA 1M9ZA 5DU1A 1NXBA 1BXPA 1FFJA 2BTXA 2CRSA 1FSCA 1NTNA 6EBXA 4EY8B 2J8BA 1QM7A 1JE9A 1YWHA 1IDHA 1PLOA 2X8BB 3LAQU 1V6PA 4HQPF 1CDSA 5IMTD 2H5FA 4FAOC 1KS6A 2H7ZA 2QC1A 2H8UA 1NEAA 2FD6U 1LXHA 2H62D 2NBTA 1JGKA 1ERGA 1L4WA 4XJJA 1FSSB 1CRFA 3VTSA 1ABTA 1BTEA 1LJZA 2HLQA 2LA1A 1IJCA 1QKEA 1FF4A 2H64C 2L03A 2QJ9C 2MUPA 4BIKB 1LSIA 1CB9A 2MUOA 2GOOB 5DO6A 4AEAA 1IDLA 1HC9A 4P7UA 2MHYA 1KTZB 1W6BA 2H62C 1RL5A 1TXBA 2CDXA 4QTIU 4RUDA 1NYUA 3EBXA 1IK8A 4BDTB 1CCQA 2PJYC 1RGJA 2JVEA 1CREA 3PLCA 3KFDE 1IQ9A 2N99A 2VLWA 3NDSA 1REWC 5IMYC 3KFDI 2MJ4A 1ERAA 4UY2C 3U73U 5DZ5A 2MJ0A 2MFAA 1HOYA 4LFTA 1H0JA 4IYEA 3EVSC 1KL8A 1CXNA 1QKDA 2K3GA 1TFSA 1VB0A 3U74U 1JBDA 1COEA 1LXGA 2ERAA 1ONJA 2OFSA 1CHVS 1B41B 1HAJA 1CTXA 3NEQA 1NYSA 1KU6B 2H64B 1TXAA 3NH7A 4FAOE 5EBXA 1CODA 1F94A 1IDGA 1LX5B 2UX2A 1FASA 1KBAA 1IDIA 3BT1U 4OM5A 2GOOC 1CXOA 2UWRA 4ZQYA 1MAHF 1KC4A 1KBSA 1KBTA 2JQPA 2I9BE 3HH7A 1CDQA 1IKCA 1CDRA
chains in the Genus database with same CATH topology
1XT3A 1FRAA 3ERAA 4DO8A 1HAAA 4OM4A 2HLRA 1DRSA 2CTXA 1NORA 2BHIA 1CDTA 2CRTA 2QJAC 2QJBC 1F8UB 2LCRA 1S4YA 1ES7B 2H7ZB 3BT2U 1NTXA 1TGXA 2L5SA 3QB4B 4KSNA 3FEVA 1ZADA 1CVOA 2CCXA 1G6MA 1I02A 2ABXA 2PJYB 1MR6A 1KXIA 1UG4A 1KFHA 1HC9B 2MJYA 1M9ZA 5DU1A 1NXBA 1BXPA 1FFJA 2BTXA 2CRSA 1FSCA 1NTNA 6EBXA 4EY8B 2J8BA 1QM7A 1JE9A 1YWHA 1IDHA 1PLOA 2X8BB 3LAQU 1V6PA 4HQPF 1CDSA 5IMTD 2H5FA 4FAOC 1KS6A 2H7ZA 2QC1A 2H8UA 1NEAA 2FD6U 1LXHA 2H62D 2NBTA 1JGKA 1ERGA 1L4WA 4XJJA 1FSSB 1CRFA 3VTSA 1ABTA 1BTEA 1LJZA 2HLQA 2LA1A 1IJCA 1QKEA 1FF4A 2H64C 2L03A 2QJ9C 2MUPA 4BIKB 1LSIA 1CB9A 2MUOA 2GOOB 5DO6A 4AEAA 1IDLA 1HC9A 4P7UA 2MHYA 1KTZB 1W6BA 2H62C 1RL5A 1TXBA 2CDXA 4QTIU 4RUDA 1NYUA 3EBXA 1IK8A 4BDTB 1CCQA 2PJYC 1RGJA 2JVEA 1CREA 3PLCA 3KFDE 1IQ9A 2N99A 2VLWA 3NDSA 1REWC 5IMYC 3KFDI 2MJ4A 1ERAA 4UY2C 3U73U 5DZ5A 2MJ0A 2MFAA 1HOYA 4LFTA 1H0JA 4IYEA 3EVSC 1KL8A 1CXNA 1QKDA 2K3GA 1TFSA 1VB0A 3U74U 1JBDA 1COEA 1LXGA 2ERAA 1ONJA 2OFSA 1CHVS 1B41B 1HAJA 1CTXA 3NEQA 1NYSA 1KU6B 2H64B 1TXAA 3NH7A 4FAOE 5EBXA 1CODA 1F94A 1IDGA 1LX5B 2UX2A 1FASA 1KBAA 1IDIA 3BT1U 4OM5A 2GOOC 1CXOA 2UWRA 4ZQYA 1MAHF 1KC4A 1KBSA 1KBTA 2JQPA 2I9BE 3HH7A 1CDQA 1IKCA 1CDRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XT3 A;  1FRA A;  3ERA A;  4DO8 A;  1HAA A;  4OM4 A;  2HLR A;  1DRS A;  2CTX A;  1NOR A;  2BHI A;  1CDT A;  2CRT A;  2QJA C;  2QJB C;  1F8U B;  2LCR A;  1S4Y A;  1ES7 B;  2H7Z B;  3BT2 U;  1NTX A;  1TGX A;  2L5S A;  3QB4 B;  3FEV A;  1ZAD A;  1CVO A;  2CCX A;  1G6M A;  1I02 A;  2ABX A;  2PJY B;  1MR6 A;  1KXI A;  1UG4 A;  1KFH A;  1HC9 B;  2MJY A;  1M9Z A;  5DU1 A;  1NXB A;  1BXP A;  1FFJ A;  2BTX A;  2CRS A;  1FSC A;  1NTN A;  6EBX A;  4EY8 B;  2J8B A;  1QM7 A;  1JE9 A;  1YWH A;  1IDH A;  1PLO A;  2X8B B;  3LAQ U;  1V6P A;  4HQP F;  1CDS A;  5IMT D;  2H5F A;  4FAO C;  1KS6 A;  2H7Z A;  2QC1 A;  2H8U A;  1NEA A;  2FD6 U;  1LXH A;  2H62 D;  2NBT A;  1JGK A;  1ERG A;  1L4W A;  4XJJ A;  1FSS B;  1CRF A;  3VTS A;  1ABT A;  1BTE A;  1LJZ A;  2HLQ A;  2LA1 A;  1IJC A;  1QKE A;  1FF4 A;  2H64 C;  2L03 A;  2QJ9 C;  2MUP A;  4BIK B;  1LSI A;  1CB9 A;  2MUO A;  2GOO B;  5DO6 A;  4AEA A;  1IDL A;  1HC9 A;  4P7U A;  2MHY A;  1KTZ B;  1W6B A;  2H62 C;  1RL5 A;  1TXB A;  2CDX A;  4QTI U;  4RUD A;  1NYU A;  3EBX A;  1IK8 A;  4BDT B;  1CCQ A;  2PJY C;  1RGJ A;  2JVE A;  1CRE A;  3PLC A;  3KFD E;  1IQ9 A;  2N99 A;  2VLW A;  3NDS A;  1REW C;  5IMY C;  3KFD I;  2MJ4 A;  1ERA A;  4UY2 C;  3U73 U;  5DZ5 A;  2MJ0 A;  2MFA A;  1HOY A;  4LFT A;  1H0J A;  4IYE A;  3EVS C;  1KL8 A;  1CXN A;  1QKD A;  2K3G A;  1TFS A;  1VB0 A;  3U74 U;  1JBD A;  1COE A;  1LXG A;  2ERA A;  1ONJ A;  2OFS A;  1CHV S;  1B41 B;  1HAJ A;  1CTX A;  3NEQ A;  1NYS A;  1KU6 B;  2H64 B;  1TXA A;  3NH7 A;  4FAO E;  5EBX A;  1COD A;  1F94 A;  1IDG A;  1LX5 B;  2UX2 A;  1FAS A;  1KBA A;  1IDI A;  3BT1 U;  4OM5 A;  2GOO C;  1CXO A;  2UWR A;  4ZQY A;  1MAH F;  1KC4 A;  1KBS A;  1KBT A;  2JQP A;  2I9B E;  3HH7 A;  1CDQ A;  1IKC A;  1CDR A; 
#chains in the Genus database with same CATH topology
 1XT3 A;  1FRA A;  3ERA A;  4DO8 A;  1HAA A;  4OM4 A;  2HLR A;  1DRS A;  2CTX A;  1NOR A;  2BHI A;  1CDT A;  2CRT A;  2QJA C;  2QJB C;  1F8U B;  2LCR A;  1S4Y A;  1ES7 B;  2H7Z B;  3BT2 U;  1NTX A;  1TGX A;  2L5S A;  3QB4 B;  4KSN A;  3FEV A;  1ZAD A;  1CVO A;  2CCX A;  1G6M A;  1I02 A;  2ABX A;  2PJY B;  1MR6 A;  1KXI A;  1UG4 A;  1KFH A;  1HC9 B;  2MJY A;  1M9Z A;  5DU1 A;  1NXB A;  1BXP A;  1FFJ A;  2BTX A;  2CRS A;  1FSC A;  1NTN A;  6EBX A;  4EY8 B;  2J8B A;  1QM7 A;  1JE9 A;  1YWH A;  1IDH A;  1PLO A;  2X8B B;  3LAQ U;  1V6P A;  4HQP F;  1CDS A;  5IMT D;  2H5F A;  4FAO C;  1KS6 A;  2H7Z A;  2QC1 A;  2H8U A;  1NEA A;  2FD6 U;  1LXH A;  2H62 D;  2NBT A;  1JGK A;  1ERG A;  1L4W A;  4XJJ A;  1FSS B;  1CRF A;  3VTS A;  1ABT A;  1BTE A;  1LJZ A;  2HLQ A;  2LA1 A;  1IJC A;  1QKE A;  1FF4 A;  2H64 C;  2L03 A;  2QJ9 C;  2MUP A;  4BIK B;  1LSI A;  1CB9 A;  2MUO A;  2GOO B;  5DO6 A;  4AEA A;  1IDL A;  1HC9 A;  4P7U A;  2MHY A;  1KTZ B;  1W6B A;  2H62 C;  1RL5 A;  1TXB A;  2CDX A;  4QTI U;  4RUD A;  1NYU A;  3EBX A;  1IK8 A;  4BDT B;  1CCQ A;  2PJY C;  1RGJ A;  2JVE A;  1CRE A;  3PLC A;  3KFD E;  1IQ9 A;  2N99 A;  2VLW A;  3NDS A;  1REW C;  5IMY C;  3KFD I;  2MJ4 A;  1ERA A;  4UY2 C;  3U73 U;  5DZ5 A;  2MJ0 A;  2MFA A;  1HOY A;  4LFT A;  1H0J A;  4IYE A;  3EVS C;  1KL8 A;  1CXN A;  1QKD A;  2K3G A;  1TFS A;  1VB0 A;  3U74 U;  1JBD A;  1COE A;  1LXG A;  2ERA A;  1ONJ A;  2OFS A;  1CHV S;  1B41 B;  1HAJ A;  1CTX A;  3NEQ A;  1NYS A;  1KU6 B;  2H64 B;  1TXA A;  3NH7 A;  4FAO E;  5EBX A;  1COD A;  1F94 A;  1IDG A;  1LX5 B;  2UX2 A;  1FAS A;  1KBA A;  1IDI A;  3BT1 U;  4OM5 A;  2GOO C;  1CXO A;  2UWR A;  4ZQY A;  1MAH F;  1KC4 A;  1KBS A;  1KBT A;  2JQP A;  2I9B E;  3HH7 A;  1CDQ A;  1IKC A;  1CDR A; 
#chains in the Genus database with same CATH homology
 1XT3 A;  1FRA A;  3ERA A;  4DO8 A;  1HAA A;  4OM4 A;  2HLR A;  1DRS A;  2CTX A;  1NOR A;  2BHI A;  1CDT A;  2CRT A;  2QJA C;  2QJB C;  1F8U B;  2LCR A;  1S4Y A;  1ES7 B;  2H7Z B;  3BT2 U;  1NTX A;  1TGX A;  2L5S A;  3QB4 B;  4KSN A;  3FEV A;  1ZAD A;  1CVO A;  2CCX A;  1G6M A;  1I02 A;  2ABX A;  2PJY B;  1MR6 A;  1KXI A;  1UG4 A;  1KFH A;  1HC9 B;  2MJY A;  1M9Z A;  5DU1 A;  1NXB A;  1BXP A;  1FFJ A;  2BTX A;  2CRS A;  1FSC A;  1NTN A;  6EBX A;  4EY8 B;  2J8B A;  1QM7 A;  1JE9 A;  1YWH A;  1IDH A;  1PLO A;  2X8B B;  3LAQ U;  1V6P A;  4HQP F;  1CDS A;  5IMT D;  2H5F A;  4FAO C;  1KS6 A;  2H7Z A;  2QC1 A;  2H8U A;  1NEA A;  2FD6 U;  1LXH A;  2H62 D;  2NBT A;  1JGK A;  1ERG A;  1L4W A;  4XJJ A;  1FSS B;  1CRF A;  3VTS A;  1ABT A;  1BTE A;  1LJZ A;  2HLQ A;  2LA1 A;  1IJC A;  1QKE A;  1FF4 A;  2H64 C;  2L03 A;  2QJ9 C;  2MUP A;  4BIK B;  1LSI A;  1CB9 A;  2MUO A;  2GOO B;  5DO6 A;  4AEA A;  1IDL A;  1HC9 A;  4P7U A;  2MHY A;  1KTZ B;  1W6B A;  2H62 C;  1RL5 A;  1TXB A;  2CDX A;  4QTI U;  4RUD A;  1NYU A;  3EBX A;  1IK8 A;  4BDT B;  1CCQ A;  2PJY C;  1RGJ A;  2JVE A;  1CRE A;  3PLC A;  3KFD E;  1IQ9 A;  2N99 A;  2VLW A;  3NDS A;  1REW C;  5IMY C;  3KFD I;  2MJ4 A;  1ERA A;  4UY2 C;  3U73 U;  5DZ5 A;  2MJ0 A;  2MFA A;  1HOY A;  4LFT A;  1H0J A;  4IYE A;  3EVS C;  1KL8 A;  1CXN A;  1QKD A;  2K3G A;  1TFS A;  1VB0 A;  3U74 U;  1JBD A;  1COE A;  1LXG A;  2ERA A;  1ONJ A;  2OFS A;  1CHV S;  1B41 B;  1HAJ A;  1CTX A;  3NEQ A;  1NYS A;  1KU6 B;  2H64 B;  1TXA A;  3NH7 A;  4FAO E;  5EBX A;  1COD A;  1F94 A;  1IDG A;  1LX5 B;  2UX2 A;  1FAS A;  1KBA A;  1IDI A;  3BT1 U;  4OM5 A;  2GOO C;  1CXO A;  2UWR A;  4ZQY A;  1MAH F;  1KC4 A;  1KBS A;  1KBT A;  2JQP A;  2I9B E;  3HH7 A;  1CDQ A;  1IKC A;  1CDR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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