6F42P

Rna polymerase iii closed complex cc1.
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
148
structure length
99
Chain Sequence
ELDIEFINSLLTIVWRFISENTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTHDCYRVTLESILQMIFNYFKMFPASKHDKEVVYFDEWT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords DNA-directed RNA polymerase III subunit RPC1
publication title Molecular mechanism of promoter opening by RNA polymerase III.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
total genus 12
structure length 99
sequence length 148
ec nomenclature
pdb deposition date 2017-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF05158 RNA_pol_Rpc34 RNA polymerase Rpc34 subunit
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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