6GD5B

The solution structure of the lpta-thanatin complex
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
21
structure length
21
Chain Sequence
GSKKPVPIIYCNRRTGKCQRM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Antibiotic
molecule keywords Lipopolysaccharide export system protein LptA
publication title Thanatin targets the intermembrane protein complex required for lipopolysaccharide transport inEscherichia coli.
pubmed doi rcsb
source organism Escherichia coli k-12
total genus 1
structure length 21
sequence length 21
ec nomenclature
pdb deposition date 2018-04-22
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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