6GSJBA

Structure of t. thermophilus 70s ribosome complex with mrna, trnafmet and cognate trnathr in the a-site
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
103
structure length
103
Chain Sequence
KKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGGLSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S ribosomal RNA
publication title Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria.
pubmed doi rcsb
total genus 36
structure length 103
sequence length 103
chains with identical sequence BI
ec nomenclature
pdb deposition date 2018-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
BA PF01649 Ribosomal_S20p Ribosomal protein S20
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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