6HA8Z

Cryo-em structure of the abcf protein vmlr bound to the bacillus subtilis ribosome
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
58
structure length
58
Chain Sequence
AKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIRGMINKVSHLVSVKEQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S rRNA
publication title Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR.
pubmed doi rcsb
source organism Bacillus subtilis (strain 168)
total genus 13
structure length 58
sequence length 58
ec nomenclature
pdb deposition date 2018-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Z PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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