6HD7n

Cryo-em structure of the ribosome-nata complex
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
50
structure length
50
Chain Sequence
AAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKMNI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-
publication title Ribosome-NatA architecture reveals that rRNA expansion segments coordinate N-terminal acetylation.
pubmed doi rcsb
total genus 4
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2018-08-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
n PF00832 Ribosomal_L39 Ribosomal L39 protein
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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