6HD7o

Cryo-em structure of the ribosome-nata complex
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
52
structure length
52
Chain Sequence
IIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Translation
molecule keywords Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-
publication title Ribosome-NatA architecture reveals that rRNA expansion segments coordinate N-terminal acetylation.
pubmed doi rcsb
total genus 5
structure length 52
sequence length 52
ec nomenclature
pdb deposition date 2018-08-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
o PF00240 ubiquitin Ubiquitin family
o PF01020 Ribosomal_L40e Ribosomal L40e family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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