6HIVCv

Cryo-em structure of the trypanosoma brucei mitochondrial ribosome - this entry contains the complete mitoribosome
Total Genus 247
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
247
sequence length
1111
structure length
1059
Chain Sequence
LKTLDVREYRPLAMPIEFRFYQRYANHPNRQSGIQFLTHYNTHQRFRVNKDYIDYMHWGKEQGQARLPHRHQRVAFDFNDQLHPTRIGYAWFASQDPTFGHHPDLSSSFDPNYRVFSHPEHWNKMFTKRRPGEGDIDLSVLPSRSLLGPLMAHSDTKGIPYFKVDNRGHSNGRVPGVNAPFFGEFDQKMMQAMSRPLNANRTITGNDGRFSKTIMINEPQCNQALSAKTASELSKEIDKATNAVYSKLSVLEAAQSGLTDYFCGGLNFEIVGFELHMAAMLRERAAAILERSGACAMLLEKADEREVNKLLRDASRYEDRVDDALRQHASLIWRVYTAPRPLMTLTNGKCRGTGCGLSLFAKYCALKDSSEFIFDGPNVGITPYGGMTRLLARPETSLKYPGLAEFVVLTGASLFAGDALRLGWTDLFTTIPDMTYHIKEWFDTTEHMHNDAVAWQLGHLLETCFKMKESHSSAMERAAITPTRARWVEDAFADQPSVNDIMRTLTEIEQLPFQSTHNTSDESHITPYTLGSVAAGVQRLGEHRLRYTLSPWDITPPEDSVVLKHTSEMFRAYVLERRGATDVVTHRDAERAAAWSQQRQREYDAYCSLKEAPHPRHVYARLEGCEGKIVSFEFVFEISCTTTISRLKSRILDALGMPRDRNIDLGWYLPTLDTCPIHSDEELMQVLHTDPGIEDPKEKLRYPPIYFIVKRCTLYFSEWAYAVKHQLLLQSPFALRAAFGLLQEVRGDGAAENVMPLAETLGTEFKYFTRLMRRPDFYRVGVHTDKSVEKWEEIKEERRHNIHHTHRPTRPLPDFEEVFERDVEIDGHRFVLRPRWNPRTLQDVDDSDILRLRAPLTYDMDSTAALHVPTHCGKASRLAGMLQDAGGVQVLDGLGEVDDKGEPKVPPLQSNASVPTNVSFYEMARHPWEDRASSWRRDGFTEGSLEYFESQYRSAERAVYDEEGRGVRNYWPSRDAVEGIAQEEENDAQLLQERLFNTLETAGTSVEPWARNLRLNATTGKFGYKTEIATQEEKIYDDEYYRWFIQPGRHPNPSGLTLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
pubmed doi rcsb
molecule keywords ms48
molecule tags Ribosome
source organism Trypanosoma brucei brucei
total genus 247
structure length 1059
sequence length 1111
ec nomenclature
pdb deposition date 2018-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Cv PF16113 ECH_2 Enoyl-CoA hydratase/isomerase
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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