6IR9W

Rna polymerase ii elongation complex bound with elf1 and spt4/5, stalled at shl(-1) of the nucleosome
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
597
structure length
275
Chain Sequence
PQRLLIPTVDDPGIWGVKVRLGKEKDVVRQILKKKLAREGTKNPLEIYSAFQRDSFKGHVYIEARKAEAINDALKGNVNVFSNNSKFLVGIVEYKDLLRPVKLTRGSYVRVKNGKFKGDLAQVDEVLENGLEARLKLVPRLDYGKDLSYTSKFRPAQRLFSEAEARVHEIRRDRDGFVTYGGEEYYEGFLYKTFRLQNLIVNSINPTLNELSLFDPTLNKTVKIRQGGYKGKIGIVKEANGDRFRVELHNPNKTIPIPCSFLLIESTHGWVPYED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/rna/dna
molecule keywords DNA-directed RNA polymerase subunit
publication title Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
pubmed doi rcsb
source organism Komagataella phaffii (strain gs115 / atcc 20864)
total genus 56
structure length 275
sequence length 597
ec nomenclature
pdb deposition date 2018-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00467 KOW KOW motif
W PF03439 Spt5-NGN Early transcription elongation factor of RNA pol II, NGN section
W PF11942 Spt5_N Spt5 transcription elongation factor, acidic N-terminal
W PF12815 CTD Spt5 C-terminal nonapeptide repeat binding Spt4
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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