6JDWA

Crystal structure of human l-arginine:glycine amidinotransferase in complex with gamma-amino butyric acid
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
360
structure length
360
Chain Sequence
CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE)
publication title The ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study.
pubmed doi rcsb
source organism Homo sapiens
total genus 121
structure length 360
sequence length 360
ec nomenclature ec 2.1.4.1: Glycine amidinotransferase.
pdb deposition date 1998-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 6jdwA00
1WD8A 1BWDA 4N2DA 2CI4A 3H7CX 4BOFA 5HP5A 4N2EA 1WD9A 2CMUA 5AN9I 2JAJA 4N2NA 2CI6A 4N26A 1XKNA 4N2BA 4N2LA 3APNA 4JDWA 5AK7A 5JDWA 1JDWA 4X8GA 2JERA 3BPBA 3RHYA 6JDWA 5M3QA 2ACIA 3I4AA 2JDWA 2JAIA 4N22A 2DEXX 4X8CA 3B1UA 1VKPA 4N2AA 4N25A 3HVMA 3P8EA 3B1TA 9JDWA 3H7KA 2CI7A 7JDWA 2EWOA 3I2EA 2CI5A 2DEYX 2JDXA 4YTBA 3JDWA 4DKTA 3P8PA 2DW5A 3APMA 4N2MA 5AK8A 2C6ZA 1RXXA 2CI1A 4N2IA 4N24A 4N2CA 2AAFA 1G62A 1H70A 2ABRA 4N20A 1WDAA 1ZBRA 1JDXA 4YT9A 4E4JA 2CI3A 2Q3UA 4N28A 4N2FA 2A9GA 2DEWX 4N2HA 8JDWA 1LXYA 1G61A 1S9RA 4YTGA 4N2KA 4N2GA
chains in the Genus database with same CATH superfamily
1WD8A 1BWDA 4N2DA 2CI4A 3H7CX 4BOFA 5HP5A 4N2EA 1WD9A 2CMUA 5AN9I 2JAJA 4N2NA 2CI6A 4N26A 1XKNA 4N2BA 4N2LA 3APNA 4JDWA 5AK7A 5JDWA 1JDWA 4X8GA 2JERA 3BPBA 3RHYA 6JDWA 5M3QA 2ACIA 3I4AA 2JDWA 2JAIA 4N22A 2DEXX 4X8CA 3B1UA 1VKPA 4N2AA 4N25A 3HVMA 3P8EA 3B1TA 9JDWA 3H7KA 2CI7A 7JDWA 1YNHA 2EWOA 3I2EA 2CI5A 2DEYX 2JDXA 4YTBA 3JDWA 4DKTA 3P8PA 1YNFA 2DW5A 3APMA 4N2MA 5AK8A 2C6ZA 1RXXA 2CI1A 4N2IA 4N24A 4N2CA 1YNIA 2AAFA 1G62A 1H70A 2ABRA 4N20A 1WDAA 1ZBRA 1JDXA 4YT9A 4E4JA 2CI3A 2Q3UA 4N28A 4N2FA 2A9GA 2DEWX 4N2HA 8JDWA 1LXYA 1G61A 1S9RA 4YTGA 4N2KA 4N2GA
chains in the Genus database with same CATH topology
1WD8A 1BWDA 4N2DA 2CI4A 3H7CX 4BOFA 5HP5A 4N2EA 1WD9A 2CMUA 5AN9I 2JAJA 4N2NA 2CI6A 4N26A 1XKNA 4N2BA 4N2LA 3APNA 4JDWA 5AK7A 5JDWA 1JDWA 4X8GA 2JERA 3BPBA 3RHYA 6JDWA 5M3QA 2ACIA 3I4AA 2JDWA 2JAIA 4N22A 2DEXX 4X8CA 3B1UA 1VKPA 4N2AA 4N25A 3HVMA 3P8EA 3B1TA 9JDWA 3H7KA 2CI7A 7JDWA 2EWOA 3I2EA 2CI5A 2DEYX 2JDXA 4YTBA 3JDWA 4DKTA 3P8PA 2DW5A 3APMA 4N2MA 5AK8A 2C6ZA 1RXXA 2CI1A 4N2IA 4N24A 4N2CA 2AAFA 1G62A 1H70A 2ABRA 4N20A 1WDAA 1ZBRA 1JDXA 4YT9A 4E4JA 2CI3A 2Q3UA 4N28A 4N2FA 2A9GA 2DEWX 4N2HA 8JDWA 1LXYA 1G61A 1S9RA 4YTGA 4N2KA 4N2GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WD8 A;  1BWD A;  4N2D A;  2CI4 A;  3H7C X;  4BOF A;  5HP5 A;  4N2E A;  1WD9 A;  2CMU A;  5AN9 I;  2JAJ A;  4N2N A;  2CI6 A;  4N26 A;  1XKN A;  4N2B A;  4N2L A;  3APN A;  4JDW A;  5AK7 A;  5JDW A;  1JDW A;  4X8G A;  2JER A;  3BPB A;  3RHY A;  6JDW A;  5M3Q A;  2ACI A;  3I4A A;  2JDW A;  2JAI A;  4N22 A;  2DEX X;  4X8C A;  3B1U A;  1VKP A;  4N2A A;  4N25 A;  3HVM A;  3P8E A;  3B1T A;  9JDW A;  3H7K A;  2CI7 A;  7JDW A;  2EWO A;  3I2E A;  2CI5 A;  2DEY X;  2JDX A;  4YTB A;  3JDW A;  4DKT A;  3P8P A;  2DW5 A;  3APM A;  4N2M A;  5AK8 A;  2C6Z A;  1RXX A;  2CI1 A;  4N2I A;  4N24 A;  4N2C A;  2AAF A;  1G62 A;  1H70 A;  2ABR A;  4N20 A;  1WDA A;  1ZBR A;  1JDX A;  4YT9 A;  4E4J A;  2CI3 A;  2Q3U A;  4N28 A;  4N2F A;  2A9G A;  2DEW X;  4N2H A;  8JDW A;  1LXY A;  1G61 A;  1S9R A;  4YTG A;  4N2K A;  4N2G A; 
#chains in the Genus database with same CATH topology
 1WD8 A;  1BWD A;  4N2D A;  2CI4 A;  3H7C X;  4BOF A;  5HP5 A;  4N2E A;  1WD9 A;  2CMU A;  5AN9 I;  2JAJ A;  4N2N A;  2CI6 A;  4N26 A;  1XKN A;  4N2B A;  4N2L A;  3APN A;  4JDW A;  5AK7 A;  5JDW A;  1JDW A;  4X8G A;  2JER A;  3BPB A;  3RHY A;  6JDW A;  5M3Q A;  2ACI A;  3I4A A;  2JDW A;  2JAI A;  4N22 A;  2DEX X;  4X8C A;  3B1U A;  1VKP A;  4N2A A;  4N25 A;  3HVM A;  3P8E A;  3B1T A;  9JDW A;  3H7K A;  2CI7 A;  7JDW A;  1YNH A;  2EWO A;  3I2E A;  2CI5 A;  2DEY X;  2JDX A;  4YTB A;  3JDW A;  4DKT A;  3P8P A;  1YNF A;  2DW5 A;  3APM A;  4N2M A;  5AK8 A;  2C6Z A;  1RXX A;  2CI1 A;  4N2I A;  4N24 A;  4N2C A;  1YNI A;  2AAF A;  1G62 A;  1H70 A;  2ABR A;  4N20 A;  1WDA A;  1ZBR A;  1JDX A;  4YT9 A;  4E4J A;  2CI3 A;  2Q3U A;  4N28 A;  4N2F A;  2A9G A;  2DEW X;  4N2H A;  8JDW A;  1LXY A;  1G61 A;  1S9R A;  4YTG A;  4N2K A;  4N2G A; 
#chains in the Genus database with same CATH homology
 1WD8 A;  1BWD A;  4N2D A;  2CI4 A;  3H7C X;  4BOF A;  5HP5 A;  4N2E A;  1WD9 A;  2CMU A;  5AN9 I;  2JAJ A;  4N2N A;  2CI6 A;  4N26 A;  1XKN A;  4N2B A;  4N2L A;  3APN A;  4JDW A;  5AK7 A;  5JDW A;  1JDW A;  4X8G A;  2JER A;  3BPB A;  3RHY A;  6JDW A;  5M3Q A;  2ACI A;  3I4A A;  2JDW A;  2JAI A;  4N22 A;  2DEX X;  4X8C A;  3B1U A;  1VKP A;  4N2A A;  4N25 A;  3HVM A;  3P8E A;  3B1T A;  9JDW A;  3H7K A;  2CI7 A;  7JDW A;  2EWO A;  3I2E A;  2CI5 A;  2DEY X;  2JDX A;  4YTB A;  3JDW A;  4DKT A;  3P8P A;  2DW5 A;  3APM A;  4N2M A;  5AK8 A;  2C6Z A;  1RXX A;  2CI1 A;  4N2I A;  4N24 A;  4N2C A;  2AAF A;  1G62 A;  1H70 A;  2ABR A;  4N20 A;  1WDA A;  1ZBR A;  1JDX A;  4YT9 A;  4E4J A;  2CI3 A;  2Q3U A;  4N28 A;  4N2F A;  2A9G A;  2DEW X;  4N2H A;  8JDW A;  1LXY A;  1G61 A;  1S9R A;  4YTG A;  4N2K A;  4N2G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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