6JHGA

Crystal structure of apo pullulanase from paenibacillus barengoltzii in space group p212121
Total Genus 225
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
225
sequence length
664
structure length
644
Chain Sequence
IDYGDVTVTGGISVFDAKFDELYVYDGDDLGAVYAPEETRFRLWAPTASEAFVVLYETEDGMPVKELPMKRDVQGTWTLTVAEDCGGLFYTYRVKVGEQWNEAVDPYAKAVGVNGTKTAILDLRSTNPEGWENDQKPPLASPTDAVIYELHVRDLSIHPQSGIREKGKFLGLTEEGTRGPNGIPTGLDHITGLGVTHVQLLPIYDYSQESVDESRLDEPHYNWGYDPQNYNVPEGSYSTDPHNPAARILELKRLIQKLHARGLRVIMDVVYNHVYDGYLIHFTKLVPGYYLRYKADRTFSDGTFCGNECASERPIMRKYIIESILHWVREYHIDGFRFDLMGMIDIETMNEIRRRLDEIDPTILTIGEGWMMETVLPKELRANQDNAEKLPGIGMFNDGMRDAVKGDIFIFDRKGFISGGDGFEDGVKRGVAGGINYGGQLRQFAVEPVQSVNYVECHDNHTLWDKIELSTPGASDEERRAMHRLASAIVLTSQGIPFLHAGQEFMRTKGGVENSYKSPIEVNWLDWERCAAHQDDVSYMRSLIALRKAHPAFRLKTADEIRAHLRFEAAPPHTVAFTLRDHAGGDPDRHLYVLYNANPGALSLELPALGPWEVRFGGEHVLALEAGARLEVRGVGVVVLAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Pulullanase
publication title Crystal structure of apo Pullulanase from Paenibacillus barengoltzii in space group P212121
rcsb
source organism Paenibacillus barengoltzii
total genus 225
structure length 644
sequence length 664
ec nomenclature ec 3.2.1.41: Pullulanase.
pdb deposition date 2019-02-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00128 Alpha-amylase Alpha amylase, catalytic domain
A PF02922 CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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