6KE6B3

3.4 angstrom cryo-em structure of yeast 90s small subunit preribosome
Total Genus 139
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
815
structure length
757
Chain Sequence
LKTSYKGISLNPIYAGSSAVATVSENGKILATPVLDEINIIDLTPGSRKILHEITALKLTPDGQYLTYVSQAQLLKIFHLKTGKVVRSMKISSPSYILDADSTSTLLAVGGTDGSIIVVDIENGYITHSFKGHGGTISSLKFYGQLNSKIWLLASGDTNGMVKVWDLVKRKCLHTLQEHTSAVRGLDIIEVPPSLNLLSGGRDDIINLWDFNMKKKCKLLKTLPVNQQVESCGFLKIIYTAGGDAIFQLIDSESGSVLKRTNKPIEELFIIGVLPILSNSQMFLVLSDQTLQLINVEEDLKNTIQVTSSIAGNHGIIADMRYVGPELNKLALATNSPSLRIIPVPDLASLPLDVEIYEGHEDLLNSLDATEDGLWIATASKDNTAIVWRYKFDIYAKYIGHSAAVTAVGLPNIVSKGYPEFLLTASNDLTIKKWIIPKPTASMDVQIIKVSEYTINALSVSPNDSIFATASYDKTCKIWNLENGELEATLANHKRGLWDVSFCQYLLATSSGDKTVKIWSSVMKTLEGHTNAVQRCSFINKQKQLISCGADGLIKCLKTLDGHNNRLWALSTMNDGDMIVSADADGVFQFWKDCTEQEIEEEQEKAKLQVEQEQSLQNYMSKGDWTNAFLLAMTLDHPMRLFNVLKRALGESRSRQEVIFNEELDQAISILNDEQLILLMKRCRDWNTNAKTHTIAQRTIRCILMHHNIAKLSEIPGMVKIVDAIIPYTQRHFTRVDNLVEQSYILDYALVEMDKLF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ribosome
molecule keywords U3 snoRNA
publication title 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome
rcsb
total genus 139
structure length 757
sequence length 815
ec nomenclature
pdb deposition date 2019-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B3 PF00400 WD40 WD domain, G-beta repeat
B3 PF08625 Utp13 Utp13 specific WD40 associated domain
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...