6KE6SH

3.4 angstrom cryo-em structure of yeast 90s small subunit preribosome
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
125
structure length
112
Chain Sequence
MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTRKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords U3 snoRNA
publication title 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome
rcsb
total genus 13
structure length 112
sequence length 125
ec nomenclature
pdb deposition date 2019-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
SH PF01092 Ribosomal_S6e Ribosomal protein S6e
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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