6L8NA

Crystal structure of the k. lactis rad5
Total Genus 229
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
229
sequence length
941
structure length
810
Chain Sequence
RWSRYIGSIHTMGFATRPTVKPVPIGSRLGFKKSSHLVRLIDTSQDRELGRMPEDVARILYPLLDYSEQVSLEPYLLINNGKRFSVGDNIYIRIDCYLTSQAFVMDTRQLHRAGAIMALFDAINIQPVYALNINQLKSFYRITQSAASLQNLPETTPDESLFKLQLRRYQKQSLSWMLKREYEYSHLSEKMNPLWKKFRWPSNSDCFFYANLYTGEFSIEKPVIKTIINGGILADEMGLGKTISALALICTASYDEAHEKKIESTDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKPKSSISQDKLDALSANFRDIHSASEQLPSFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANVLKLKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHDKDLSCIKLLLLSLKTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRIEEIQMLFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein
molecule keywords DNA repair protein RAD5
publication title Structural basis for the multi-activity factor Rad5 in replication stress tolerance.
pubmed doi rcsb
source organism Kluyveromyces lactis nrrl y-1140
total genus 229
structure length 810
sequence length 941
ec nomenclature ec 3.6.4.-:
pdb deposition date 2019-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
A PF00176 SNF2_N SNF2 family N-terminal domain
A PF00271 Helicase_C Helicase conserved C-terminal domain
A PF08797 HIRAN HIRAN domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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