6LBRA

Crystal structure of yeast cdc13 and ssdna
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
529
structure length
519
Chain Sequence
GSDPFDLKPDSISKAITDRLYHISDGKILGFIPNQYLDPESSLIEDDFLLIYVYTYELPLLSAVFVPEYNCYEIAITNVAKFFSKIGVRSYPHSIKNSLLELKELIDNNRYDITIYKKEFTIGAAKSSKWALKDVVLRSALPTPKEVTFTENKFPLVRVSNIVPSASSRYYTVIGLAVTVKYTGGKTLVLSFTDFTANPKVNYGYDSFLGSFQERIPENEHVHALIYLNRVESLNEKLQSIIKMGLMECADKGNSNITHRSIIFKFTVKCQLFQGKLNTVILDADPITPTTPVTTEEYKLLKPLRNKIFKRMPSEVIQLYTLTMSRFLPISKNRMSENPQLLQEQAFYDDSIAKLENQLKREGVDKIEEDAATRPIELFGTRNPKTVDIIDIKNNVQMDHKDIKVTAKILSIFDNGNNVTIYLTRSGMVGTQCTIENPFEELLKVQIWGRQNLTLFFGNPNYSYKREELTACIGSIVDFTLIPRVLRVNEYLYIKIWCPIYATLESLLIHSRLEYDNDT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein/dna
molecule keywords KLLA0F20922p
publication title Structural insights into telomere protection and homeostasis regulation by yeast CST complex.
pubmed doi rcsb
source organism Kluyveromyces lactis
total genus 137
structure length 519
sequence length 529
chains with identical sequence B
ec nomenclature
pdb deposition date 2019-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02765 POT1 Telomeric single stranded DNA binding POT1/CDC13
A PF18233 Cdc13_OB4_dimer Cdc13 OB4 dimerization domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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