6LD6A

Structure of bifidobacterium dentium beta-glucuronidase
Total Genus 215
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
215
sequence length
669
structure length
620
Chain Sequence
NGMLYPQSNDSRIVFPLDGVWDFRTAGEDSYPAEWADAPLPEPLPMAVPGSYNDQNDELNLRAHYGWVVYQRSFAVPSRLVAGQRMILRFDAATHAADVYLNGQLLGSHFGGFLPFEFDVTSALHAGENLLTVAVDNRIGSSTLPVGNDAGTAFMGSDNANVPAVAEAKKHARRQNLPNFDFFNFAGLNRHVELYTTPADAYIADIAITTERLDHIAGDACTAANALIAYDVTFGGDGRQVRISILDGEGTVVAGVTADIERTAKASGEIAIRDAKLWNPGAAYLYTAVAELLPSRIIDAYRQTFGIRTVEVSGTTFLINGKPFYFKGFGKHEDSYFHGRGTDDVLNVKDVSLIHWLHANSFRTSHYPYAESMYDLCDREGIVIIDEVPAVGMSWLQYANPLVAERHREAIRGMIARDKNHPCIVMWSIANEPGLDGDGERPRQAYDYFRPLYELAHASDPQNRPVTLVCCQNDYTTDITERTMDVVCINRYYGWYNLSGDLDAACHALNIELDFWENIGKPVMFTEYGADTIEGIHGTHGEMFSEEFQRDYYARINAEIDKRPWFIGEQLWNFADFATFQGIIRVEGNRKGILTRDRQPKMAAHWLRERWAGIPDYGYK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords LacZ1 Beta-galactosidase
publication title Entropy-favored inhibitors are in vivo effective to intestinal bacterial beta-glucuronidases
rcsb
source organism Bifidobacterium dentium (strain atcc 27534 / dsm 20436 / jcm 1195 / bd1)
total genus 215
structure length 620
sequence length 669
chains with identical sequence B, C, D
ec nomenclature ec 3.2.1.23: Beta-galactosidase.
pdb deposition date 2019-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00703 Glyco_hydro_2 Glycosyl hydrolases family 2
A PF02836 Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain
A PF02837 Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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