6LU8g

Cryo-em structure of a human pre-60s ribosomal subunit - state a
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
118
structure length
118
Chain Sequence
KIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords Nucleolar GTP-binding protein 2
publication title Structural snapshots of human pre-60S ribosomal particles before and after nuclear export.
pubmed doi rcsb
source organism Homo sapiens
total genus 20
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2020-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
g PF00276 Ribosomal_L23 Ribosomal protein L23
g PF03939 Ribosomal_L23eN Ribosomal protein L23, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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