6LYNC

Cd146 d4-d5/aa98 fab
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
183
structure length
183
Chain Sequence
QELLVNYVSDVRVSPAAPERQEGSSLTLTCEAESSQDLEFQWLREETGQVLERGPVLQLHDLKREAGGGYRCVASVPSIPGLNRTQLVNVAIFGPPWMAFKERKVWVKENMVLNLSCEASGHPRPTISWNVNGTASEQDQDPQRVLSTLNVLVTPELLETGVECTASNDLGKNTSILFLELVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
molecule keywords AA98 Fab heavy chain
publication title Structure Basis for AA98 Inhibition on the Activation of Endothelial Cells Mediated by CD146
rcsb
source organism Mus musculus
total genus 33
structure length 183
sequence length 183
chains with identical sequence D
ec nomenclature
pdb deposition date 2020-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00047 ig Immunoglobulin domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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