6M5MB

Spl-1 - glcnac complex
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
137
structure length
137
Chain Sequence
CCSEDDCPSGWKFFGGSCYLFDEGSRGWEGSKAFCESKDASLVTVECSKEDDFIRGILSGQTAKHYYWIGARWNEEHNDYRWIDGSPFTFIGWGPGKPDNNKGCLDYLNYKEVVWQWNDHVDCENTNGPCICEIDCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords N-acetylglucosamine-specific lectin
publication title Novel carbohydrate-recognition mode of the invertebrate C-type lectin SPL-1 from Saxidomus purpuratus revealed by the GlcNAc-complex crystal in the presence of Ca2.
pubmed doi rcsb
total genus 36
structure length 137
sequence length 137
ec nomenclature
pdb deposition date 2020-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00059 Lectin_C Lectin C-type domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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