6MASA

X-ray structure of branchiostoma floridae fluorescent protein lanfp10g
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
216
structure length
215
Chain Sequence
PLPKTHELHIFGSFNGVEFDMVGRGIGNPNEGSEELNAKFTKGPLKFSPYILVPHLYYQYLPFPDGMSPFQAAMHDGSGYQVHRTIQYEDGASVTAHYRYTYEGSHIKGEFQVIGTGFPPDGPVMTNKLTAMDWSVTKMLYPNDKTILSTADCSYTTTAGKRYQSKMRENNTFAKPMAADILQKQPMFVFRKSELQHSKTELTFKEWQKAFTDVM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Fluorescent protein
molecule keywords Uncharacterized protein
publication title Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue.
pubmed doi rcsb
source organism Branchiostoma floridae
total genus 58
structure length 215
sequence length 216
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2018-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01353 GFP Green fluorescent protein
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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