6MI7C

Nucleotide-free cryo-em structure of e.coli lptb2fgc
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
24
structure length
24
Chain Sequence
MSKARRWVIIVLSLAVLVMIGINM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/transport protein
molecule keywords Lipopolysaccharide export system permease protein LptF
publication title Structural basis of lipopolysaccharide extraction by the LptB2FGC complex.
pubmed doi rcsb
source organism Escherichia coli (strain k12)
total genus 4
structure length 24
sequence length 24
ec nomenclature
pdb deposition date 2018-09-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF06835 LptC Lipopolysaccharide-assembly, LptC-related
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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