6MIDH

Cryo-em structure of the zikv virion in complex with fab fragments of the potently neutralizing human monoclonal antibody zikv-195
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
127
structure length
127
Chain Sequence
VQLVESGGGVVHPGRSLRLSCAASGFTFSSSAMHWVRQAPGKGLEWVAVISYDGSNKYYGDSVKGRFTISRDNSKNTLYLQMHSLRAEDTAVYYCAKDRDAYNTVGYFAYYYGMDVWGQGTLVTVSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus/immune system
molecule keywords E protein
publication title Structural basis of a potent human monoclonal antibody against Zika virus targeting a quaternary epitope.
pubmed doi rcsb
total genus 10
structure length 127
sequence length 127
ec nomenclature
pdb deposition date 2018-09-19
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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