6NJMF

Structure of a complex
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
208
structure length
169
Chain Sequence
RGVQMLLTTVGAFAAFSLMTIAVGTDYWLYSRGVMTHSGLWRTCCLFKGLCKQIDHFPEDTAEYFLRAVRASSIFPILSVILLFMGGLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYISANAYSYGWSFYFGALSFIIAEMVGVLAVHMFIDRHKQLRATAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein/immune system
molecule keywords Glutamate receptor 3
publication title Architecture and subunit arrangement of native AMPA receptors elucidated by cryo-EM.
pubmed doi rcsb
source organism Mus musculus
total genus 50
structure length 169
sequence length 208
chains with identical sequence H
ec nomenclature
pdb deposition date 2019-01-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF00822 PMP22_Claudin PMP-22/EMP/MP20/Claudin family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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