The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively. For RNA structures we plot several genus traces for various types of base pairs, as explained here.
Total Genus |
5
|
sequence length |
76
|
structure length |
76
|
Chain Sequence |
GGGGCUAUAGCUCAGCUGGGAGAGCGCUUGCUUGGCAAGCAAGAGGUCAGCGGUUCGAUCCCGCUUAGCUCCACCA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ribosome
|
| molecule keywords |
16S rRNA
|
| publication title |
Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
pubmed doi rcsb |
| total genus |
5
|
| structure length |
76
|
| sequence length |
76
|
| RNA BGSU Site |
RNA BGSU Site Entry
|
| chains with identical sequence |
XY
|
| equivalent chains according to BGSU RNA Site |
6ord XY
6oj2 XY
6ope QY
6ope XY
6oj2 XW
6of6 XY
6oj2 QY
6oj2 QW
6of6 QY
6of6 QW
6of6 XW
|
| ec nomenclature | |
| pdb deposition date | 2019-04-30 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
